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phylo_linkages.html
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<!DOCTYPE html>
<html lang="en">
<head>
<title>PrePhyloPro</title>
<meta charset="utf-8" />
<meta http-equiv="X-UA-Compatible" content="IE=edge" />
<meta name="viewport" content="width=device-width, initial-scale=1" />
<meta name="description" content="Online prediction of whole genomic linkages" />
<meta name="author" content="Yulong Niu" />
<link href='http://fonts.googleapis.com/css?family=Lato:300,400,300italic,400italic' rel='stylesheet' type='text/css'>
<link href='http://fonts.googleapis.com/css?family=Montserrat:400,700' rel='stylesheet' type='text/css'>
<!-- DataTable and self defined css -->
<link rel="stylesheet" type="text/css" href="https://cdn.datatables.net/1.10.15/css/jquery.dataTables.min.css">
<link rel="stylesheet" type="text/css" href="https://rawgit.com/YulongNiu/PhyloProfileWeb/master/phyloCGI/pppStyle/linkmat/pppDataTable.css"/>
</head>
<h3 id="linkage_number">Threshold of linkages number for each gene</h3>
{topNum}
<h3 id="blast_evalue">Threshold of BLAST Evalue</h3>
{evalueObj}
<h3 id="plot_profile">Phylogenetic profiles of input genes</h3>
<center><img border="0" src="profilePlot.jpg" alt="profilePlot.jpg"></img></center>
<h3 id="plot_cormatrix">Correlation matrix of input genes</h3>
<center><img border="0" src="cormatrixPlot.jpg" alt="cormatrixPlot.jpg"></img></center>
<h3 id="plot_circosJS">Circos plot of predicted linkages</h3>
<p>
{circosJSFigObj}
</p>
<div id='pppcircos'></div>
<h3 id="plot_d3network">D3 network of predicted linkages</h3>
{d3FigObj}
<h3 id="linkage_matrix">Predicted linkages</h3>
<table id="linksmat" class="row-border hover order-column" cellspacing="0" width="100%"></table>
<h3 id="download">Download</h3>
<p><a href="/phyloprofile/tmpData/{fnDir}.tar.gz">Click to download results</a></p>
<!-- network3d -->
<script src="https://rawgit.com/YulongNiu/PhyloProfileWeb/master/phyloCGI/pppStyle/d3network/htmlwidgets-0.8/htmlwidgets.js"></script>
<script src="https://rawgit.com/YulongNiu/PhyloProfileWeb/master/phyloCGI/pppStyle/d3network/forceNetwork-binding-0.4/forceNetwork.js"></script>
<!-- DataTable -->
<script src="https://d3js.org/d3.v4.min.js"></script>
<script src="https://code.jquery.com/jquery-1.12.4.js"></script>
<script src="https://cdn.datatables.net/1.10.15/js/jquery.dataTables.min.js"></script>
<script src="https://rawgit.com/YulongNiu/PhyloProfileWeb/master/phyloCGI/pppStyle/linkmat/pppDataTable.js"></script>
<!-- circosJS -->
<script src="https://cdn.rawgit.com/nicgirault/circosJS/v2/dist/circos.js"></script>
<script src="https://rawgit.com/YulongNiu/PhyloProfileWeb/master/phyloCGI/pppStyle/d3circos/{orgObj}_circos.js"></script>
</html>