From 8d1206e0cba41f65890b3241d9efe76d13671e4c Mon Sep 17 00:00:00 2001 From: Laetitia Fesselier Date: Thu, 30 Mar 2023 12:23:46 -0400 Subject: [PATCH] [EEG Browser] Clean dependency tree and fix security issues (#8486) The npm package DifferenceEquationSignal1D had a dependency on a outdated version of npm-check-updates which is a tool that is preferably installed and used globally. Removing this dependency pruned the eeg browser dependency tree by 75%. --- .../package-lock.json | 3621 +---------------- .../jsx/react-series-data-viewer/package.json | 1 - .../src/libs/DifferenceEquationSignal1D.js | 136 + .../src/series/store/logic/highLowPass.tsx | 3 +- 4 files changed, 204 insertions(+), 3557 deletions(-) create mode 100644 modules/electrophysiology_browser/jsx/react-series-data-viewer/src/libs/DifferenceEquationSignal1D.js diff --git a/modules/electrophysiology_browser/jsx/react-series-data-viewer/package-lock.json b/modules/electrophysiology_browser/jsx/react-series-data-viewer/package-lock.json index 14a9136c059..d177bc3de23 100644 --- a/modules/electrophysiology_browser/jsx/react-series-data-viewer/package-lock.json +++ b/modules/electrophysiology_browser/jsx/react-series-data-viewer/package-lock.json @@ -18,7 +18,6 @@ "d3-dsv": "^1.0.10", "d3-scale": "^4.0.2", "d3-scale-chromatic": "^3.0.0", - "differenceequationsignal1d": "^0.1.1", "gl-matrix": "^2.8.1", "google-protobuf": "^3.6.1", "ramda": "^0.25.0", @@ -293,236 +292,21 @@ "react": "^16.3.0-0 || ^17.0.0-0 || ^18.0.0-0" } }, - 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http://me.jonathanlurie.fr +* License MIT +* Link https://github.com/jonathanlurie/differenceequationsignal1d +* Lab MCIN - http://mcin.ca/ - Montreal Neurological Institute +*/ + + +class DifferenceEquationSignal1D { + constructor() { + this._inputSignal = null; + this._outputSignal = null; + this._aCoefficients = null; + this._bCoefficients = null; + this._enableBackwardSecondPass = false; + } + + + /** + * Set the input signal. Will also reset the output to null. + * + * @param {Float32Array} signal - the signal + */ + setInput(signal) { + this._outputSignal = null; + this._inputSignal = signal; + } + + + /** + * Set the array of 'a' coefficients. Must be padded by an additional "1.0" because + * this set of coefficient will be addressed at it index "1" (and not "0") + * + * @param {Float32Array|Array} a - the 'a' coeficients + */ + setACoefficients(a) { + this._aCoefficients = a; + } + + + /** + * Set the array of 'b' coefficients + * + * @param {Float32Array|Array} b - the 'b' coeficients + */ + setBCoefficients(b) { + this._bCoefficients = b; + } + + + /** + * Get the output signal + * + * @return {Float32Array} the filtered signal + */ + getOutput() { + return this._outputSignal; + } + + + /** + * Will process the signal backwards as a second pass, using the same coeficients. + * This is to make sure the output remain in phase with the input + */ + enableBackwardSecondPass() { + this._enableBackwardSecondPass = true; + } + + + /** + * Will not process the signal backwards as a second pass. + * Depending on the coefficients, the output may not be in phase with the input. + */ + disableBackwardSecondPass() { + this._enableBackwardSecondPass = false; + } + + + /** + * Launch the filtering. In the end, get the output using the method `.getOutput()` + */ + run() { + let out = new Float32Array(this._inputSignal.length).fill(0); + + // some shortcuts + let x = this._inputSignal; + let y = out; + let b = this._bCoefficients; + let a = this._aCoefficients; + let M = b.length - 1; + let N = a.length - 1; + + /** + * + * @param {number} n + */ + function getOutputAt(n) { + // sum of the x + let xSum = 0; + for (let i=0; i<=M; i++) { + const safeSignaValue = (i>n)? 0 : x[n-i]; + xSum += b[i] * safeSignaValue; + } + + // sum of the y + let ySum = 0; + for (let j=1; j<=N; j++) { + const safeSignaValue = (j>n)? 0 : y[n-j]; + ySum += a[j] * safeSignaValue; + } + + let valueAtN = xSum - ySum; + return valueAtN; + } + + for (let i=0; i