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ChangeLog
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2011-01-13 Claude Lepage <claude@bic.mni.mcgill.ca>
* Fixed typo with headers in fieldIO.cc
2010-12-08 Claude Lepage <claude@bic.mni.mcgill.ca>
* Improved convergence of field outside mask for voxel
sizes much small than 1 (histology slices at 10 microns)
* Added option to save correction field in nu_evaluate
2010-06-15 Dave MacFarlane <david.macfarlane2@mcgill.ca>
* Moved Splines to N3 from EBTKS (must now use EBTKS 1.6.4
or above)
2009-06-15 Claude Lepage <claude@bic.mni.mcgill.ca>
* Remove downsampling in evaluation of field (computers are fast
now, so be more accurate by sampling at full resolution)
* Correct the field in the region outside the mask to make
sure the mask varies smoothly away from the brain (important
with the previous changes)
* New program for the far-field correction
2009-05-08 Claude Lepage <claude@bic.mni.mcgill.ca>
* Make nu_estimate_np_and_em.in invariant to voxel steps (via
spline_smooth in EBTKS - must use EBTKS 1.6.2 or above)
* Free memory after usage
2008-06-10 Andrew L Janke <a.janke@gmail.com>
* updated README, merged CHANGES and WHATSNEW into NEWS
* src/NUcorrect/nu_estimate_np_and_EM: added code to check on
(deprecated) use of the EM section and thus spit a warning
* epm-header.in: removed netcdf dependency
2006-04-29 Claude Lepage <claude@bic.mni.mcgill.ca>
* change xPERLx to @PERL@, etc.
2006-04-27 Claude Lepage <claude@bic.mni.mcgill.ca>
* repackaging for minc2 m4 files
2005-03-16 Andrew Janke <a.janke@gmail.com>
* Changed from MNI:DataDir to FindBin for binary distribution
* Added epm-header.in for binary distribution
2005-03-08 Bert Vincent <bert@bic.mni.mcgill.ca>
* src/SharpenHist/sharpen_hist.cc uses finite(), which is not
available on many versions of Solaris. Added a test to look for
isfinite() as well as finite() in configure.in
* src/EvaluateField/evaluateField.cc,
src/SplineSmooth/splineSmooth.cc, src/VolumeHist/minchist.cc
Get rid of redundant #define N_DIMENSIONS 3, which duplicates
the definition in volume_io.h and generates a warning.
2004-11-18 Bert Vincent <bert@bic.mni.mcgill.ca>
* src/ExtractTag/extracttag.c - minor change to argTable[] to
reflect the fact that -mintags and -maxtags take 'long' arguments
rather than 'int' arguments. This was pointed out as a potential
issue on 64-bit platforms by Yasunari Tosa of MGH.
2004-11-17 Bert Vincent <bert@bic.mni.mcgill.ca>
* nu_estimate_np_and_em.in - fixed CreateMask to work properly
if the user-provided mask file winds up having the same name
as the internally generated temporary mask file. This should only
happen when the user-specified file is compressed, or otherwise
needs processing before it can be used. This problem sometimes
resulted in test case #14 failing.
2004-03-26 Bert Vincent <bert@bic.mni.mcgill.ca>
* volumeStats.cc - Use the standard DBL_MAX and float.h rather
than the less standard MAXDOUBLE.
2004-03-16 Bert Vincent <bert@bic.mni.mcgill.ca>
* configure.in - Update such that the tests for lapack and blas
can work on Debian Linux (specifically audrey.bic.mni.mcgill.ca)
2004-02-05 Bert Vincent <bert@bic.mni.mcgill.ca>
* make_template.in - Apply edit suggested by John Sled which
avoids the "excessively large header" problem by using the entire
output file as a template.
2004-01-29 Bert Vincent <bert@bic.mni.mcgill.ca>
* Makefile.am - turn on execute bits for scripts, uncomment SUBDIRS
so that the tests can be included.
* testing/do_test.in - several minor fixes to deal with newer autoconf
directory layout.
* testing/Makefile.am - added, to enable 'make check'.
* configure.in - add testing/Makefile to the AC_CONFIG_FILES list.
2003-11-25 Steve ROBBINS <stever@bic.mni.mcgill.ca>
* configure.in: Set version to 1.07.
* Makefile.am (EXTRA_DIST):
* VERSION: Remove.
* configure.in: Obtain version number from automake variable
$VERSION, rather than file named "VERSION".
* Makefile.am (lapack_link_flags): Ensure lapack and blas appear
after $(LIBS) on link line, since LIBS contains "-lEBTKS", which
is what needs lapack.
2003-11-16 Steve ROBBINS <stever@bic.mni.mcgill.ca>
* INSTALL: Explain lapack and clapack options. Minor wording
changes.
* configure.in: Probe for MNI volume_io library. Probe for
FORTRAN BLAS and LAPACK using macro from ac-archive; probe for
CLAPACK if that fails.
2003-11-14 Steve ROBBINS <stever@bic.mni.mcgill.ca>
* configure.in: Set version to 1.06.
* src/VolumeStats/VolumeStatsArgs.cc:
* src/VolumeStats/volumeStats.cc:
* src/VolumeHist/args.cc:
* src/SplineSmooth/splineSmoothArgs.cc:
* src/SharpenHist/sharpen_hist.cc:
* src/SharpenHist/args.cc:
* src/EvaluateField/evaluateFieldArgs.cc: Use namespace std;
2003-09-02 Steve M. Robbins <steve@nyongwa.montreal.qc.ca>
* autogen.sh: Create directory ac_config_aux.
2003-04-16 Bert Vincent <bert@bic.mni.mcgill.ca>
* fully autoconf'd
* Extracted EBTKS, math libraries