From 49fbaa6bb63b73393317b812b5080b22df031f86 Mon Sep 17 00:00:00 2001 From: Tom Harrop Date: Tue, 2 Jan 2024 14:58:09 +1100 Subject: [PATCH] Typo in genomeTransformVCF --- extras/doc-latex/STARmanual.tex | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/extras/doc-latex/STARmanual.tex b/extras/doc-latex/STARmanual.tex index 5ca07181..cd9580e5 100644 --- a/extras/doc-latex/STARmanual.tex +++ b/extras/doc-latex/STARmanual.tex @@ -634,7 +634,7 @@ \section{STARconsensus} \begin{itemize} \item -Provide the VCF file with consensus SNVs and InDels at the genome generation stage with \opt{genomeTransformVC} \optv{ Variants.vcf} \opt{genomeTransformType} \optv{Haploid}. +Provide the VCF file with consensus SNVs and InDels at the genome generation stage with \opt{genomeTransformVCF} \optv{ Variants.vcf} \opt{genomeTransformType} \optv{Haploid}. The alternative alleles in this VCF will be inserted to the reference genome to create a "transformed" genome. Both the genome sequence and transcript/gene annotations are transformed. @@ -650,7 +650,7 @@ \section{STARdiploid} \begin{itemize} \item - Provide the VCF file with diploid SNVs and InDels at the genome generation stage with \opt{genomeTransformVC} \optv{ Variants.vcf} \opt{genomeTransformType} \optv{Diploid}. + Provide the VCF file with diploid SNVs and InDels at the genome generation stage with \opt{genomeTransformVCF} \optv{ Variants.vcf} \opt{genomeTransformType} \optv{Diploid}. The homozygous and heterozygous alleles from this VCF will be inserted into the reference genome to create a "transformed" genome with two haplotypes. Both the genome sequence and transcript/gene annotations are transformed.