From ec2a871892411ce1c6c5a421d0cbc95bd90cfb2c Mon Sep 17 00:00:00 2001
From: Zebulun Arendsee <arendsee@iastate.edu>
Date: Thu, 1 Feb 2018 13:24:09 -0600
Subject: [PATCH] Release v0.1.0 - version used in ISCB paper submission

---
 DESCRIPTION |  4 ++--
 README.md   | 23 +++++++++++++----------
 2 files changed, 15 insertions(+), 12 deletions(-)

diff --git a/DESCRIPTION b/DESCRIPTION
index 8bc583b..60ee9dc 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -1,9 +1,9 @@
 Package: phylostratr
 Title: Analyze phylostratigraphic data
-Version: 0.0.0.9000
+Version: 0.1.0
 Authors@R: person("Zebulun", "Arendsee", email = "zbwrnz@gmail.com", role = c("aut", "cre"))
 Description:
-    Analyze phylostratigraphic data. Details to come.
+    Infer the age of genes using phylostratigraphic methods. 
 Depends: R (>= 3.4.0)
 Imports:
     ape,
diff --git a/README.md b/README.md
index 00e1111..14150bd 100644
--- a/README.md
+++ b/README.md
@@ -3,21 +3,24 @@
 
 # phylostratr
 
-I'll fill this out after I submit the paper. In the meantime, see the vignette.
+Predict and explore the age of genes using phylostratigraphic methods.
 
+## Installation
 
-## TODO
+You can install from CRAN with:
 
- - [ ] Add handling for custom trees (not just the NCBI common tree)
+```{r github-installation, eval=FALSE}
+library(devtools)
+install_github("arendsee/phylostratr")
+```
 
- - [ ] Resurrect the noise analysis
+## Dependencies
 
- - [ ] Add reverse protein analysis
+ * NCBI BLAST+
 
- - [ ] Resurrect the revenant hunters and plotters
+## Funding
 
- - [ ] Use datadr for execution
+This work is funded by the National Science Foundation grant:
 
- - [ ] Use SQLite for storing BLAST results
-
- - [ ] Generate a report (both archive and excel)
+[NSF-IOS 1546858](https://www.nsf.gov/awardsearch/showAward?AWD_ID=1546858)
+Orphan Genes: An Untapped Genetic Reservoir of Novel Traits