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Pipeline_version.txt
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Pipeline_version.txt
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Version information of Tools in NGS_pipeline:
VERSION1: November,2015
BWA: bwa-0.7.12
source link: https://sourceforge.net/projects/bio-bwa/files/bwa-0.7.12.tar.bz2/download
Picard: Picard-1.140
source link: https://github.com/broadinstitute/picard/releases/tag/1.140
Samtools: Version: 1.2
Source_link: https://sourceforge.net/projects/samtools/files/samtools/1.2/samtools-1.2.tar.bz2/download
GATK: version 3.4-46-gbc02625
Source_link: https://software.broadinstitute.org/gatk/download/auth?package=GATK-archive&version=3.4-46-gbc02625
CNVKIT: single verison
Source_link: http://cnvkit.readthedocs.io/en/latest/quickstart.html#install-cnvkit
Annovar: Latest verison
source_link: http://annovar.openbioinformatics.org/en/latest/user-guide/download/
_____________________________________________________________________________________
VERSION2: August,2016
BWA: BWA-07.15
source_link: https://sourceforge.net/projects/bio-bwa/files/bwa-0.7.15.tar.bz2/download
Picard: Picard-2.6.0
source_link: https://github.com/broadinstitute/picard/releases/tag/2.6.0
Samtools: Samptools-1.3.1
SOurce_link: https://sourceforge.net/projects/samtools/files/latest/download
GATK: GATK-3.6
Source_Link: https://software.broadinstitute.org/gatk/download/auth?package=GATK