Merge branch 'dev'

Author: ban-m

.github/workflows/ci.yml

@@ -0,0 +1,24 @@
+name: Rust
+
+on:
+  push:
+    branches: [ "main" ]
+  pull_request:
+    branches: [ "main" ]
+
+env:
+  CARGO_TERM_COLOR: always
+
+jobs:
+  build:
+
+    runs-on: ubuntu-latest
+
+    steps:
+    - uses: actions/checkout@v4
+    - name: Build
+      run: cargo build --release --verbose
+    - name: Run tests
+      run: cargo test --release --verbose
+    - name: Clippy run
+      run: cargo clippy --release

haplotyper/README.md

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+# ToDo-list for the Global aim: Scaling up to the diploig genome scale assembler
+
+## Adaptive tuning for the error rate
+
+- The error rate **must be** uniformal/independnt from the sequence context...
+
+## Speeding up
+
+- Removing 
+
+## Wise selection of the chunks
+
+- Variable-length chunks might be the way to go