diff --git a/README.md b/README.md index 0d9ffd7..cb152c7 100644 --- a/README.md +++ b/README.md @@ -2,11 +2,7 @@ Visualize & compare retinal cell data. - - -

This browser does not support PDFs. Please download the PDF to view it: Download PDF.

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+![Retinal Map Visualization](output/my_retina_figure.png) # How to cite this package ``` Cohn, Brian A., et al. "Retinal topography maps in R: New tools for the analysis and visualization of spatial retinal data." Journal of vision 15.9 (2015): 19-19. @@ -33,7 +29,7 @@ This project provides an accurate and rigorous tool for visualizing data from an #### Questions/Ideas/Help -[Post a github issue ticket (15 seconds)](https://github.com/bcohn12/retina/issues/new "Post an issue ticket") +[Post a github issue ticket (15 seconds)](https://github.com/bc/retina/issues/new "Post an issue ticket") #### Notes 1. Thank you to David Sterratt (Sterratt et. al. 2013) who designed and published the stitching algorithm. (GPL-2 License) diff --git a/main.r b/main.r index 5cb15b4..4138e00 100644 --- a/main.r +++ b/main.r @@ -64,7 +64,9 @@ ggsave("output/flatplot.pdf",p,width=8, height=8) #remove the NA's where there were no points dtt_projected <- na.omit(measurement_dt, cols="azi_x") -pdf("output/my_retina_figure.pdf", width=11,height=8.5, useDingbats=FALSE) +# PDF output is cleaner +# pdf("output/my_retina_figure.pdf", width=11,height=8.5, useDingbats=FALSE) +png("output/my_retina_figure.png", width=800,height=600) fit_data <- fit_plot_azimuthal(dtt_projected$azi_x, dtt_projected$azi_y, z = dtt_projected$measurement, diff --git a/output/flatplot.pdf b/output/flatplot.pdf index 5a1a5aa..f521588 100644 Binary files a/output/flatplot.pdf and b/output/flatplot.pdf differ diff --git a/output/my_retina_figure.png b/output/my_retina_figure.png new file mode 100644 index 0000000..dcab98f Binary files /dev/null and b/output/my_retina_figure.png differ diff --git a/output/outline_coordinates.pdf b/output/outline_coordinates.pdf index 49a194d..092711e 100644 Binary files a/output/outline_coordinates.pdf and b/output/outline_coordinates.pdf differ