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Hi. I ran DECA script below:
deca-submit \ --master local[64] \ --driver-class-path $DECA_JAR \ --conf spark.local.dir=~/tmp \ --conf spark.driver.maxResultSize=0 \ --conf spark.kryo.registrationRequired=true \ --driver-memory 64G \ -- coverage \ -L Twist_Exome_RefSeq_targets_hg38.bed \ -I ../fastq/*/*recalibrated.bam \ -o DECA.RD.txt deca-submit \ --master local[64] \ --driver-class-path $DECA_JAR \ --conf spark.local.dir=~/tmp \ --conf spark.driver.maxResultSize=0 \ --conf spark.kryo.registrationRequired=true \ --driver-memory 64G \ -- normalize_and_discover \ -min_some_quality 29.5 \ -I DECA.RD.txt \ -o DECA.20200724.gff3
And I got impossible end position from output gff3 file.
chrX sample0136_S157 DUP 155773872 9223372036854775807 10.582000050240811 . . END_TARGET=205696;START_TARGET=205632;Q_SOME=99;Q_START=36;Q_STOP=27;Q_EXACT=11;Q_NON_DIPLOID=99
Why this happen? I'm waiting for your reply. Thanks.
The text was updated successfully, but these errors were encountered:
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Hi.
I ran DECA script below:
And I got impossible end position from output gff3 file.
Why this happen?
I'm waiting for your reply. Thanks.
The text was updated successfully, but these errors were encountered: