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sqlalchemy missing from required dependencies list #98

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ehclark opened this issue Oct 21, 2024 · 0 comments · Fixed by #101
Closed

sqlalchemy missing from required dependencies list #98

ehclark opened this issue Oct 21, 2024 · 0 comments · Fixed by #101
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ehclark commented Oct 21, 2024

The sqlalchemy library is required for both Postgres and Snowflake storage backends. It should be in the list of required dependencies.

To Reproduce

  1. Clone anyvar repo
  2. Follow the instructions to prepare for development: make devready
  3. Start anyvar: uvicorn anyvar.restapi.main:app
    ERROR: ModuleNotFoundError: No module named 'sqlalchemy'

Expected behavior
AnyVar starts up successfully
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Fix problems introduced by project configuration changes and dependency upgrades biocommons/anyvar
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