From 20e73c324f0bfabfa717ec630562dd6c9e5a588f Mon Sep 17 00:00:00 2001
From: Kyle Ferriter <kferrite@broadinstitute.org>
Date: Tue, 5 Sep 2023 12:09:46 -0400
Subject: [PATCH 1/3] Use a process-global object for _get_or_create instead of
 request-scoped flask.g

---
 src/seqrepo_rest_service/threadglobals.py | 10 ++++------
 1 file changed, 4 insertions(+), 6 deletions(-)

diff --git a/src/seqrepo_rest_service/threadglobals.py b/src/seqrepo_rest_service/threadglobals.py
index 855f3ab..fc19c50 100644
--- a/src/seqrepo_rest_service/threadglobals.py
+++ b/src/seqrepo_rest_service/threadglobals.py
@@ -3,24 +3,22 @@
 """
 
 import logging
-import os
 
 from biocommons.seqrepo import SeqRepo
-from flask import current_app, g
+from flask import current_app
 
 _logger = logging.getLogger(__name__)
 
 
 def get_seqrepo():
     seqrepo_dir = current_app.config["seqrepo_dir"]
-    _logger.info(f"Opening {seqrepo_dir=}")
     return _get_or_create("seqrepo", lambda: SeqRepo(root_dir=seqrepo_dir))
 
 
 def _get_or_create(k, f):
-    k = "_" + k
-    o = getattr(g, k, None)
+    k = '_' + k
+    o = getattr(_get_or_create, k, None)
     if o is None:
         o = f()
-        setattr(g, k, o)
+        setattr(_get_or_create, k, o)
     return o

From 41b6e162e8d83ada938e35aee32d87b3e2ce2fbc Mon Sep 17 00:00:00 2001
From: Kyle Ferriter <kferrite@broadinstitute.org>
Date: Tue, 5 Sep 2023 12:32:20 -0400
Subject: [PATCH 2/3] Add back a log when SeqRepo obj is created

---
 src/seqrepo_rest_service/threadglobals.py | 8 +++++---
 1 file changed, 5 insertions(+), 3 deletions(-)

diff --git a/src/seqrepo_rest_service/threadglobals.py b/src/seqrepo_rest_service/threadglobals.py
index fc19c50..b8e1555 100644
--- a/src/seqrepo_rest_service/threadglobals.py
+++ b/src/seqrepo_rest_service/threadglobals.py
@@ -12,13 +12,15 @@
 
 def get_seqrepo():
     seqrepo_dir = current_app.config["seqrepo_dir"]
+    if _get_or_create("seqrepo", None, False) is None:
+        _logger.info("Opening seqrepo_dir=%s", seqrepo_dir)
     return _get_or_create("seqrepo", lambda: SeqRepo(root_dir=seqrepo_dir))
 
 
-def _get_or_create(k, f):
-    k = '_' + k
+def _get_or_create(k, f, create=True):
+    k = "_" + k
     o = getattr(_get_or_create, k, None)
-    if o is None:
+    if o is None and create:
         o = f()
         setattr(_get_or_create, k, o)
     return o

From a993a80bdbbf975a57d27ebdcd61c96b38bf2a37 Mon Sep 17 00:00:00 2001
From: Reece Hart <reecehart@gmail.com>
Date: Mon, 13 Nov 2023 11:10:16 -0800
Subject: [PATCH 3/3] soft-pinned dependencies in setup.cfg

---
 setup.cfg | 5 +++--
 1 file changed, 3 insertions(+), 2 deletions(-)

diff --git a/setup.cfg b/setup.cfg
index 7229a5e..8b43162 100644
--- a/setup.cfg
+++ b/setup.cfg
@@ -6,9 +6,10 @@ package_dir =
 zip_safe = True
 
 install_requires =
-    biocommons.seqrepo>=0.6.2
+    biocommons.seqrepo~=0.6
     coloredlogs
-    connexion[swagger-ui]>=2.2
+    connexion[swagger-ui]~=2.2
+    Flask~=2.2
 
 [options.extras_require]
 dev =