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Expose static and steady-state analyses through SED-ML #45

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jonrkarr opened this issue Jan 4, 2021 · 1 comment
Open
6 tasks

Expose static and steady-state analyses through SED-ML #45

jonrkarr opened this issue Jan 4, 2021 · 1 comment
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enhancement New feature or request

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@jonrkarr
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jonrkarr commented Jan 4, 2021

Such as

  • Steady-State Analysis
  • Stoichiometric State Analysis
  • MCA
  • Lyapunov Exponents
  • Time Scale Separation
  • Sensitivity Analysis

Todo

  • Map each COPASI method/parameter to a KiSAO term (e.g., build a table of the correspondence between COPASI and KiSAO)
    • Add additional KiSAO terms as needed
  • Add the above algorithms to the curation of COPASI
  • Expand map of KiSAO terms to COPASI methods
  • Curate a few test cases (SED-ML files)
  • Add unit tests involving these test cases
@jonrkarr
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jonrkarr commented May 5, 2021

@fbergmann @shoops here's what needs to be done to expand COPASI to additional methods. Can you help with this?

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