-
Notifications
You must be signed in to change notification settings - Fork 0
/
nextflow.config
64 lines (42 loc) · 1.1 KB
/
nextflow.config
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
process.container = '/workdir/TREx_shared/projects/CHIP_ATAC_DEV.sif'
singularity.enabled = true
singularity.autoMounts = true
singularity.runOptions = "-B /local -B /workdir"
process {
withLabel:process_low {
cpus = 2
memory = 14.GB
}
withLabel:process_medium {
cpus = 8
memory = 32.GB
}
withLabel:process_high {
cpus = 20
memory = 200.GB
}
withLabel:process_mqc {
container = "docker://multiqc/multiqc:latest"
}
withLabel:process_screen {
container = "file:///workdir/TREx_shared/projects/TREX_SCREEN.sif"
}
withLabel:process_deeptools {
cpus = 20
memory = 100.GB
container = "file:///workdir/TREx_shared/projects/CHIP_ATAC_V3.sif"
}
withLabel:process_rsync {
cpus = 20
memory = 100.GB
container = "file:///workdir/TREx_shared/projects/SAR_Tools3.sif"
}
}
workflow.onComplete = {
// any workflow property can be used here
println "Pipeline complete"
println "Command line: $workflow.commandLine"
}
workflow.onError = {
println "Error: something when wrong"
}