diff --git a/assets/docker/salmonTE/Dockerfile b/assets/docker/salmonTE/Dockerfile index 64d1721..60c1021 100644 --- a/assets/docker/salmonTE/Dockerfile +++ b/assets/docker/salmonTE/Dockerfile @@ -7,7 +7,7 @@ RUN curl -LO "https://github.com/hyunhwan-jeong/SalmonTE/archive/refs/heads/main rm -r SalmonTE-main/example SalmonTE-main/test -FROM continuumio/miniconda3:23.3.1-0 +FROM continuumio/miniconda3:23.3.1-0-alpine RUN conda update -y -n base -c defaults conda; \ conda config --add channels conda-forge; \ conda config --add channels bioconda; \ @@ -15,7 +15,7 @@ RUN conda update -y -n base -c defaults conda; \ RUN conda install -n base -y conda-libmamba-solver ; \ conda config --set solver libmamba RUN conda install -y \ - snakemake \ + snakemake=7.28.3 \ pandas \ docopt \ r-base=4.2.3 \ @@ -23,10 +23,6 @@ RUN conda install -y \ r-writexls \ r-tidyverse \ bioconductor-deseq2 - # r-base \ - # r-latticeextra \ - # r-hmisc \ - # r-rms \ WORKDIR /opt COPY --from=0 /home/curl_user/SalmonTE-main ./SalmonTE