diff --git a/assets/docker/salmonTE/Dockerfile b/assets/docker/salmonTE/Dockerfile index 60c1021..74bd333 100644 --- a/assets/docker/salmonTE/Dockerfile +++ b/assets/docker/salmonTE/Dockerfile @@ -2,12 +2,12 @@ FROM curlimages/curl:7.81.0 WORKDIR /home/curl_user -RUN curl -LO "https://github.com/hyunhwan-jeong/SalmonTE/archive/refs/heads/main.zip" && \ - unzip main.zip && \ - rm -r SalmonTE-main/example SalmonTE-main/test +RUN curl -LO "https://github.com/ftabaro/SalmonTE/archive/refs/heads/master.zip" && \ + unzip master.zip && \ + rm -r SalmonTE-master/example SalmonTE-master/test -FROM continuumio/miniconda3:23.3.1-0-alpine +FROM continuumio/miniconda3:23.3.1-0 RUN conda update -y -n base -c defaults conda; \ conda config --add channels conda-forge; \ conda config --add channels bioconda; \ @@ -25,4 +25,5 @@ RUN conda install -y \ bioconductor-deseq2 WORKDIR /opt -COPY --from=0 /home/curl_user/SalmonTE-main ./SalmonTE +COPY --from=0 /home/curl_user/SalmonTE-master ./SalmonTE +