Can we have an API as batch size for the integration method?

[HelloWorldLTY]

Hi, My dataset is very large, which cannot be handled by tangram, so I wonder if it is possible to have a key or api known as batch size to address this problem. Thanks a lot.

[gaddamshreya1]

Hey @HelloWorldLTY, currently there isn't a way to process batches.
Could you let me know the dimensions of your dataset, both single cell and spatial.
I will try to help you with a work around!

Best,
Shreya

[HelloWorldLTY]

Hi, the spatial data are in 160,000+ cells. Single-cell data are in 30,000 cells.

[gaddamshreya1]

Hi @HelloWorldLTY ,

Thank you so much for your patience!
Since your spatial data is super large, one thing you could is to split your spatial data to different part and then continue with you mapping.
For example: If you have many tissue segments, you could map each segment separately.