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expose fastq_to_bam via WDL #1001

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tomkinsc opened this issue Feb 5, 2020 · 0 comments
Open

expose fastq_to_bam via WDL #1001

tomkinsc opened this issue Feb 5, 2020 · 0 comments

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@tomkinsc
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tomkinsc commented Feb 5, 2020

The command line function fastq_to_bam exists as part of read_utils.py, however it is not currently exposed via WDL. A task to call the function should be added to tasks_read_utils.wdl and a new workflow should be created, fastqs_to_bam, calling the task.
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