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Split chromosomes before joint genotyping #26

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campanam opened this issue Nov 18, 2021 · 1 comment

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campanam commented Nov 18, 2021

Increase parallelization by splitting the chr before joint-genotyping. Also prevents wasted effort genotyping chaff.

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campanam commented Mar 19, 2024

This would also help WhatsHap phasing which is currently single-threaded by necessity. May necessitate dropping of support for GATK3.

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