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Assumes write on exec location #33

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keiranmraine opened this issue Apr 23, 2019 · 0 comments

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keiranmraine commented Apr 23, 2019

VAGrENT/bin/AnnotateVcf.pl

Line 98 in 350e058

(undef,$output) = tempfile('vagrentXXXXXXX', OPEN => 0, SUFFIX => '.vcf');

This template expects write access on the current working directory. Under read-only containers this can cause problems.

Change to write temporary files colocated with output path or /tmp.

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