Update S3 Ingestion workflow to support PerSectionParameter

[manasaV3]

Task

Update the existing ingestion workflow to support capturing metadata for the per section parameters.

The changes required for the entities are as follows:

Tiltseries Metadata

{
...
"per_section_parameters" : [
    {
        "frame_path": "10000/TS_026/Frames/frame1.tiff",
        "raw_angle": 0.1,
        "z-index": 15,
        "frame_acquistion_order": 1,
        "astigmatic_angle": 0.324,
        "major_defocus": 1.234,
        "minor_defocus": 2.345,
        "phase_shift": 3.456,
        "max_resolution": 9.876
    },
    ...
],
...

How are the data sourced?

Name	Data type	Nullable	Where is this sourced from
astigmatic_angle	float	true	The ctf file should be the source for this. ctf_model.azimuth
frame_acquisition_order	int	false	The Mdoc file should be the source for this field.
frame_path	str	true	The Mdoc file should be the source for this field.
major_defocus	float	true	The ctf file should be the source for this. ctf_model.defocus_1
minor_defocus	float	true	The ctf file should be the source for this. ctf_model.defocus_2
max_resolution	float	true	The ctf file should be the source for this. ctf_model.max_resolution
phase_shift	float	true	The ctf file should be the source for this. ctf_model.phase_shift
raw_ange	float	false	The Mdoc file should be the source for this field.
z_index	int	false	This is the index of the angle, in the raw tlt file. The raw-tlt file is zero-indexed.

What done looks like?

Notes

1. https://gist.github.com/uermel/9632d5e32e4ee861502ba2a019e3bc20