Atria v1.1.1

v1.1.1

• Performance optimization: adapter and PE trimming: following v1.1.0-1, if the loosen match's nmatch > trim_score, replace the old one.

v1.1.0

• Performance optimization: adapter and PE trimming: if no adapters were matched, the number of errors of PE match is loose.

• Performance optimization: consensus calling: new arg --kmer-tolerance-consensus 2->10; optimized arg --min-ratio-mismatch 0.2->0.28.

• Speed optimization: check overlap_score > 0 before computing score (pe_consensus!).

v1.0.3

• More detailed error output when encoding a non-nucleotide character (throw_encode_error(...)).

• Following symbolic link before checking file size for non-Windows platforms (check_filesize(::String)).

• When run in multi-file parallel mode, write stdout and stderr to a 'stdlog' file (julia_wrapper_atria(...)).

• Add option --check-identifier to check whether the identifiers of r1 and r2 are the same.

Atria v1.0.2

First official release of Atria.