From 6785cf216a065573fa6a5822752512692919f0d4 Mon Sep 17 00:00:00 2001 From: haesleinhuepf Date: Thu, 23 Apr 2020 17:47:01 +0200 Subject: [PATCH] added missing menu entries --- src/main/resources/plugins.config | 55 ++++++++++++++++++++----------- 1 file changed, 35 insertions(+), 20 deletions(-) diff --git a/src/main/resources/plugins.config b/src/main/resources/plugins.config index 1137993c..ba66796c 100644 --- a/src/main/resources/plugins.config +++ b/src/main/resources/plugins.config @@ -21,6 +21,7 @@ Plugins>ImageJ on GPU (CLIJ2)>Binary, "Closing using box neighborh Plugins>ImageJ on GPU (CLIJ2)>Binary, "Closing using diamond neighborhood on GPU (experimental)", net.haesleinhuepf.clij2.plugins.ClosingDiamond Plugins>ImageJ on GPU (CLIJ2)>Binary, "Fill Holes on GPU (experimental)", net.haesleinhuepf.clij2.plugins.BinaryFillHoles Plugins>ImageJ on GPU (CLIJ2)>Binary, "Voronoi (Octagon) on GPU (experimental)", net.haesleinhuepf.clij2.plugins.VoronoiOctagon +Plugins>ImageJ on GPU (CLIJ2)>Binary, "Label Voronoi (Octagon) on GPU (experimental)", net.haesleinhuepf.clij2.plugins.LabelVoronoiOctagon Plugins>ImageJ on GPU (CLIJ2)>Binary, "-", null Plugins>ImageJ on GPU (CLIJ2)>Binary, "Mask image on GPU (experimental)", net.haesleinhuepf.clij2.plugins.Mask Plugins>ImageJ on GPU (CLIJ2)>Binary, "Mask an 3D image with a 2D mask on GPU (experimental)", net.haesleinhuepf.clij2.plugins.MaskStackWithPlane @@ -116,6 +117,7 @@ Plugins>ImageJ on GPU (CLIJ2)>Filter, "Replace a specific intensit Plugins>ImageJ on GPU (CLIJ2)>Filter, "Replace a list of intensities in an image on GPU (experimental)", net.haesleinhuepf.clij2.plugins.ReplaceIntensities Plugins>ImageJ on GPU (CLIJ2)>Filter>Neighbors, "Mean value of touching neighbors on GPU (experimental)", net.haesleinhuepf.clij2.plugins.MeanOfTouchingNeighbors +Plugins>ImageJ on GPU (CLIJ2)>Filter>Neighbors, "Median value of touching neighbors on GPU (experimental)", net.haesleinhuepf.clij2.plugins.MedianOfTouchingNeighbors Plugins>ImageJ on GPU (CLIJ2)>Filter>Neighbors, "Minimum value of touching neighbors on GPU (experimental)", net.haesleinhuepf.clij2.plugins.MinimumOfTouchingNeighbors Plugins>ImageJ on GPU (CLIJ2)>Filter>Neighbors, "Maximum value of touching neighbors on GPU (experimental)", net.haesleinhuepf.clij2.plugins.MaximumOfTouchingNeighbors @@ -205,17 +207,25 @@ Plugins>ImageJ on GPU (CLIJ2)>Measure, "Get size of image on GPU (e Plugins>ImageJ on GPU (CLIJ2)>Measure, "Count non-zero pixels on GPU (experimental)", net.haesleinhuepf.clij2.plugins.CountNonZeroPixels Plugins>ImageJ on GPU (CLIJ2)>Measure, "Statistics of label map excluding background on GPU (experimental)", net.haesleinhuepf.clij2.plugins.StatisticsOfLabelledPixels Plugins>ImageJ on GPU (CLIJ2)>Measure, "Statistics of label map including background on GPU (experimental)", net.haesleinhuepf.clij2.plugins.StatisticsOfBackgroundAndLabelledPixels +Plugins>ImageJ on GPU (CLIJ2)>Measure, "Statistics whole image on GPU (experimental)", net.haesleinhuepf.clij2.plugins.StatisticsOfImage +Plugins>ImageJ on GPU (CLIJ2)>Measure, "Sum all slices of an image stack on GPU (experimental)", net.haesleinhuepf.clij2.plugins.SumImageSliceBySlice Plugins>ImageJ on GPU (CLIJ2)>Measure>Mesh, "Average distance of n closest points from a distance matrix on GPU (experimental)", net.haesleinhuepf.clij2.plugins.AverageDistanceOfNClosestPoints Plugins>ImageJ on GPU (CLIJ2)>Measure>Mesh, "Average distance of touching neighbors on GPU (experimental)", net.haesleinhuepf.clij2.plugins.AverageDistanceOfTouchingNeighbors Plugins>ImageJ on GPU (CLIJ2)>Measure>Mesh, "Determine shortest distances from a distance matrix on GPU (experimental)", net.haesleinhuepf.clij2.plugins.ShortestDistances Plugins>ImageJ on GPU (CLIJ2)>Measure>Mesh, "Count touching neighbors from touch matrix on GPU (experimental)", net.haesleinhuepf.clij2.plugins.CountTouchingNeighbors -Plugins>ImageJ on GPU (CLIJ2)>Measure>Mesh, "Generate distance matrix from position lists on GPU (experimental)", net.haesleinhuepf.clij2.plugins.GenerateDistanceMatrix +Plugins>ImageJ on GPU (CLIJ2)>Measure>Mesh, "Generate distance matrix from pointlists on GPU (experimental)", net.haesleinhuepf.clij2.plugins.GenerateDistanceMatrix Plugins>ImageJ on GPU (CLIJ2)>Measure>Mesh, "Generate touch matrix from label map on GPU (experimental)", net.haesleinhuepf.clij2.plugins.GenerateTouchMatrix -Plugins>ImageJ on GPU (CLIJ2)>Measure>Mesh, "Determine n shortest distances from a distance matrix on GPU (experimental)", net.haesleinhuepf.clij2.plugins.NClosestPoints +Plugins>ImageJ on GPU (CLIJ2)>Measure>Mesh, "Determine n shortest points from a distance matrix on GPU (experimental)", net.haesleinhuepf.clij2.plugins.NClosestPoints +Plugins>ImageJ on GPU (CLIJ2)>Measure>Mesh, "Determine n shortest distances from a distance matrix on GPU (experimental)", net.haesleinhuepf.clij2.plugins.NClosestDistances + Plugins>ImageJ on GPU (CLIJ2)>Measure>Mesh, "Generate mesh from touch matrix on GPU (experimental)", net.haesleinhuepf.clij2.plugins.TouchMatrixToMesh Plugins>ImageJ on GPU (CLIJ2)>Measure>Mesh, "Determine minimum distance of touching neighbors on GPU (experimental)", net.haesleinhuepf.clij2.plugins.MinimumDistanceOfTouchingNeighbors +Plugins>ImageJ on GPU (CLIJ2)>Measure>Mesh, "Convert touch matrix to adjacency matrix on GPU (experimental)", net.haesleinhuepf.clij2.plugins.TouchMatrixToAdjacencyMatrix +Plugins>ImageJ on GPU (CLIJ2)>Measure>Mesh, "Convert adjacency matrix to touch matrix on GPU (experimental)", net.haesleinhuepf.clij2.plugins.AdjacencyMatrixToTouchMatrix + + Plugins>ImageJ on GPU (CLIJ2)>Macro tools, "CLIJ2 ClInfo ", net.haesleinhuepf.clij2.plugins.ClInfo Plugins>ImageJ on GPU (CLIJ2)>Macro tools, "CLIJ Debug on/off ", net.haesleinhuepf.clij.utilities.DebugToggle Plugins>ImageJ on GPU (CLIJ2)>Macro tools, "Clear GPU memory ", net.haesleinhuepf.clij2.plugins.Clear @@ -227,7 +237,9 @@ Plugins>ImageJ on GPU (CLIJ2)>Macro tools, "List GPU properies (Experim Plugins>ImageJ on GPU (CLIJ2)>Macro tools, "List available GPUs (Experimental) ", net.haesleinhuepf.clij2.plugins.ListAvailableGPUs Plugins>ImageJ on GPU (CLIJ2)>Macro tools, "Invalidate kernel cache (Experimental) ", net.haesleinhuepf.clij2.plugins.InvalidateKernelCache -Plugins>ImageJ on GPU (CLIJ2)>Labeling, "Connected components analysis/labeling on GPU (experimental)", net.haesleinhuepf.clij2.plugins.ConnectedComponentsLabeling + +Plugins>ImageJ on GPU (CLIJ2)>Labeling, "Connected components analysis/labeling (box) on GPU (experimental)", net.haesleinhuepf.clij2.plugins.ConnectedComponentsLabelingBox +Plugins>ImageJ on GPU (CLIJ2)>Labeling, "Connected components analysis/labeling (diamond) on GPU (experimental)", net.haesleinhuepf.clij2.plugins.ConnectedComponentsLabelingDiamond Plugins>ImageJ on GPU (CLIJ2)>Labeling, "Mask a label in an image on GPU (experimental)", net.haesleinhuepf.clij2.plugins.MaskLabel Plugins>ImageJ on GPU (CLIJ2)>Labeling, "-", null @@ -244,11 +256,12 @@ Plugins>ImageJ on GPU (CLIJ2)>Labeling, "Detect label edges on GPU ( Plugins>ImageJ on GPU (CLIJ2)>Labeling, "Label spots on GPU (experimental)", net.haesleinhuepf.clij2.plugins.LabelSpots Plugins>ImageJ on GPU (CLIJ2)>Labeling, "Label to mask on GPU (experimental)", net.haesleinhuepf.clij2.plugins.LabelToMask Plugins>ImageJ on GPU (CLIJ2)>Labeling, "Labelled spots to pointlist on GPU (experimental)", net.haesleinhuepf.clij2.plugins.LabelledSpotsToPointList -Plugins>ImageJ on GPU (CLIJ2)>Labeling, "Spots image to position list on GPU (experimental)", net.haesleinhuepf.clij2.plugins.SpotsToPointList +Plugins>ImageJ on GPU (CLIJ2)>Labeling, "Spots image to pointlist on GPU (experimental)", net.haesleinhuepf.clij2.plugins.SpotsToPointList +Plugins>ImageJ on GPU (CLIJ2)>Labeling, "Pointlist to label spots image on GPU (experimental)", net.haesleinhuepf.clij2.plugins.PointlistToLabelledSpots -Plugins>ImageJ on GPU (CLIJ2)>Table, "Convert 2D image to a table on GPU (experimental)", net.haesleinhuepf.clij2.plugins.Image2DToResultsTable -Plugins>ImageJ on GPU (CLIJ2)>Table, "Convert a table to a 2D image on GPU (experimental)", net.haesleinhuepf.clij2.plugins.ResultsTableToImage2D -Plugins>ImageJ on GPU (CLIJ2)>Table, "Convert a table column to an image on GPU (experimental)", net.haesleinhuepf.clij2.plugins.ResultsTableColumnToImage +Plugins>ImageJ on GPU (CLIJ2)>Table, "Convert 2D image to a table on GPU (experimental)", net.haesleinhuepf.clij2.plugins.PullToResultsTable +Plugins>ImageJ on GPU (CLIJ2)>Table, "Convert a table to a 2D image on GPU (experimental)", net.haesleinhuepf.clij2.plugins.PushResultsTable +Plugins>ImageJ on GPU (CLIJ2)>Table, "Convert a table column to an image on GPU (experimental)", net.haesleinhuepf.clij2.plugins.PushResultsTableColumn Plugins>ImageJ on GPU (CLIJ2)>Threshold, "Automatic threshold on GPU (experimental)", net.haesleinhuepf.clij2.plugins.AutomaticThreshold Plugins>ImageJ on GPU (CLIJ2)>Threshold, "Apply a threshold on GPU (experimental)", net.haesleinhuepf.clij2.plugins.Threshold @@ -313,30 +326,32 @@ Plugins>ImageJ on GPU (CLIJ2)>Transform, "Transpose in XZ on GPU Plugins>ImageJ on GPU (CLIJ2)>Transform, "Transpose in YZ on GPU (experimental)", net.haesleinhuepf.clij2.plugins.TransposeYZ Plugins>ImageJ on GPU (CLIJ2)>Transform, "Resample image on GPU (experimental)", net.haesleinhuepf.clij2.plugins.Resample Plugins>ImageJ on GPU (CLIJ2)>Transform, "Image to stack on GPU (experimental)", net.haesleinhuepf.clij2.plugins.ImageToStack - - +Plugins>ImageJ on GPU (CLIJ2)>Transform, "Concatenate two image stacks on GPU (experimental)", net.haesleinhuepf.clij2.plugins.ConcatenateStacks Plugins>ImageJ on GPU (CLIJ2)>Projections, "Minimum-Z-projection on GPU (experimental)", net.haesleinhuepf.clij2.plugins.MinimumZProjection Plugins>ImageJ on GPU (CLIJ2)>Projections, "Maximum-Z-projection on GPU (experimental)", net.haesleinhuepf.clij2.plugins.MaximumZProjection Plugins>ImageJ on GPU (CLIJ2)>Projections, "Mean-Z-projection on GPU (experimental)", net.haesleinhuepf.clij2.plugins.MeanZProjection -Plugins>ImageJ on GPU (CLIJ2)>Projection, "Median-Z-Projection on GPU (experimental)", net.haesleinhuepf.clij2.plugins.MedianZProjection -Plugins>ImageJ on GPU (CLIJ2)>Projection, "Standard-Deviation-Z-projection on GPU (experimental)", net.haesleinhuepf.clij2.plugins.StandardDeviationZProjection +Plugins>ImageJ on GPU (CLIJ2)>Projections, "Median-Z-Projection on GPU (experimental)", net.haesleinhuepf.clij2.plugins.MedianZProjection +Plugins>ImageJ on GPU (CLIJ2)>Projections, "Standard-Deviation-Z-projection on GPU (experimental)", net.haesleinhuepf.clij2.plugins.StandardDeviationZProjection Plugins>ImageJ on GPU (CLIJ2)>Projections, "Sum-Z-projection on GPU (experimental)", net.haesleinhuepf.clij2.plugins.SumZProjection Plugins>ImageJ on GPU (CLIJ2)>Projections, "-", null Plugins>ImageJ on GPU (CLIJ2)>Projections, "ArgMaximum-Z-projection on GPU (experimental)", net.haesleinhuepf.clij2.plugins.ArgMaximumZProjection -Plugins>ImageJ on GPU (CLIJ2)>Projection, "Maximum-X-projection on GPU (experimental)", net.haesleinhuepf.clij2.plugins.MaximumXProjection -Plugins>ImageJ on GPU (CLIJ2)>Projection, "Maximum-Y-projection on GPU (experimental)", net.haesleinhuepf.clij2.plugins.MaximumYProjection -Plugins>ImageJ on GPU (CLIJ2)>Projection, "Maximum-Z-projection (bounded) on GPU (experimental)", net.haesleinhuepf.clij2.plugins.MaximumZProjectionBounded -Plugins>ImageJ on GPU (CLIJ2)>Projection, "Minimum-Z-projection (bounded) on GPU (experimental)", net.haesleinhuepf.clij2.plugins.MinimumZProjectionBounded -Plugins>ImageJ on GPU (CLIJ2)>Projection, "Maximum-Z-projection (threshold/bounded) on GPU (experimental)", net.haesleinhuepf.clij2.plugins.MinimumZProjectionThresholdedBounded -Plugins>ImageJ on GPU (CLIJ2)>Projection, "Mean-Z-projection (bounded) on GPU (experimental)", net.haesleinhuepf.clij2.plugins.MeanZProjectionBounded -Plugins>ImageJ on GPU (CLIJ2)>Projection, "Sum-X-projection on GPU (experimental)", net.haesleinhuepf.clij2.plugins.SumXProjection -Plugins>ImageJ on GPU (CLIJ2)>Projection, "Sum-Y-projection on GPU (experimental)", net.haesleinhuepf.clij2.plugins.SumYProjection +Plugins>ImageJ on GPU (CLIJ2)>Projections, "Maximum-X-projection on GPU (experimental)", net.haesleinhuepf.clij2.plugins.MaximumXProjection +Plugins>ImageJ on GPU (CLIJ2)>Projections, "Maximum-Y-projection on GPU (experimental)", net.haesleinhuepf.clij2.plugins.MaximumYProjection +Plugins>ImageJ on GPU (CLIJ2)>Projections, "Maximum-Z-projection (bounded) on GPU (experimental)", net.haesleinhuepf.clij2.plugins.MaximumZProjectionBounded +Plugins>ImageJ on GPU (CLIJ2)>Projections, "Minimum-Z-projection (bounded) on GPU (experimental)", net.haesleinhuepf.clij2.plugins.MinimumZProjectionBounded +Plugins>ImageJ on GPU (CLIJ2)>Projections, "Maximum-Z-projection (threshold/bounded) on GPU (experimental)", net.haesleinhuepf.clij2.plugins.MinimumZProjectionThresholdedBounded +Plugins>ImageJ on GPU (CLIJ2)>Projections, "Mean-Z-projection (bounded) on GPU (experimental)", net.haesleinhuepf.clij2.plugins.MeanZProjectionBounded +Plugins>ImageJ on GPU (CLIJ2)>Projections, "Sum-X-projection on GPU (experimental)", net.haesleinhuepf.clij2.plugins.SumXProjection +Plugins>ImageJ on GPU (CLIJ2)>Projections, "Sum-Y-projection on GPU (experimental)", net.haesleinhuepf.clij2.plugins.SumYProjection + + + +Plugins>ImageJ on GPU (CLIJ2), "CLIJ2 Version 0.27.2 (alpha release)", null -Plugins>ImageJ on GPU (CLIJ2), "CLIJ2 Version 0.27.0 (alpha release)", null