Skip to content
New issue

Have a question about this project? # for a free GitHub account to open an issue and contact its maintainers and the community.

#

By clicking “#”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? # to your account

Jump to bottom

Submit fastadir fixes for SeqRepo #14

Closed
theferrit32 opened this issue Jul 28, 2023 · 2 comments
Closed

Submit fastadir fixes for SeqRepo #14

theferrit32 opened this issue Jul 28, 2023 · 2 comments
Assignees
@theferrit32
Labels
biocommons Dependent or related to an issue in biocommons

Comments

@theferrit32
Copy link
Contributor

@larrybabb I'm putting this ticket here so we track it on our board
@theferrit32 theferrit32 self-assigned this Jul 28, 2023
@theferrit32
Copy link
Contributor Author

@larrybabb I am moving this to in progress to work on next because this bug is causing too much headache downstream to put off for longer. And my workaround downstream in gk-pilot broke and we can now only run single-threaded, and debugging that is going to take time that could be better spent on fixing the underlying issue.

And I think we want this fixed before the biocommons hackathon anyways.

@theferrit32 theferrit32 added the biocommons Dependent or related to an issue in biocommons label Sep 5, 2023
@theferrit32
Copy link
Contributor Author

This has been submitted in biocommons/biocommons.seqrepo#117

There is still some discussion about what the exact changes should be but hopefully there will be some agreement.

Our cloud deployment of variation normalizer is running using that branch of seqrepo so we are not gated by waiting for a merge.

# for free to join this conversation on GitHub. Already have an account? # to comment
Assignees

@theferrit32 theferrit32

Labels
biocommons Dependent or related to an issue in biocommons
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
1 participant
@theferrit32