DESCRIPTION

Type: Package
Package: chevreulShiny
Title: Tools for managing SingleCellExperiment objects as projects
Version: 0.99.2
Authors@R: c(
    person("Kevin", "Stachelek", , "kevin.stachelek@gmail.com", 
    role = c("aut", "cre"), comment = c(ORCID = "0000-0003-2085-695X")),
    person("Bhavana", "Bhat", , "bhavanabhat29@gmail.com", role = "aut")
    )
Description: Tools for managing SingleCellExperiment objects as projects. 
    Includes functions for analysis and visualization of single-cell data. 
    Also included is a shiny app for visualization of pre-processed scRNA data.
    Supported by NIH grants R01CA137124 and R01EY026661 to David Cobrinik.
License: MIT + file LICENSE
URL: https://github.com/whtns/chevreulShiny,
    https://whtns.github.io/chevreulShiny/
Date: 2024-03-24
BugReports: https://github.com/cobriniklab/chevreulShiny/issues
Depends:
    R (>= 4.4.0),
    SingleCellExperiment,
    shiny (>= 1.6.0),
    shinydashboard,
    chevreulProcess,
    chevreulPlot
Imports:
    alabaster.base,
    chevreuldata,
    clustree,
    ComplexHeatmap,
    DataEditR (>= 0.0.9),
    DBI,
    dplyr,
    DT,
    EnhancedVolcano,
    ExperimentHub,
    fs,
    future,
    ggplot2,
    ggplotify,
    ggpubr,
    glue,
    grDevices,
    methods,
    plotly,
    purrr,
    rappdirs,
    readr,
    RSQLite,
    S4Vectors,
    scran,
    shinyFiles,
    shinyhelper,
    shinyjs,
    shinyWidgets,
    stats,
    stringr,
    SummarizedExperiment,
    tibble,
    tidyr,
    utils,
    waiter,
    wiggleplotr (>= 1.13.1)
Suggests:
    BiocStyle,
    knitr,
    RefManageR,
    rmarkdown,
    testthat (>= 3.0.0)
VignetteBuilder:
    knitr
Encoding: UTF-8
LazyData: false
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.1
biocViews:
    Coverage, RNASeq, Sequencing, Visualization, GeneExpression, 
    Transcription, SingleCell, Transcriptomics, Normalization, Preprocessing, 
    QualityControl, DimensionReduction, DataImport
Config/testthat/edition: 3