nextflow.config

// PIPELINE CONFIGURATION =====================================================

// Pipeline Information ------------------------------------------------------- 

manifest {
  author      = '...'
  name        = '...'
  description = '...'
  homePage    = 'https://github.com/comp-med/nf-...'
}

// Default workflow parameters ------------------------------------------------

params {
  help    = false
  version = '0.0.1'
  outDir  = './output/'
  input   = false
}

// Resume pipeline from last successful process
resume = true

// Input Parameters -----------------------------------------------------------
params {
}

// Logging & Extras -----------------------------------------------------------

// Produce a workflow diagram  
// More info: https://www.nextflow.io/docs/latest/tracing.html#dag-visualisation
dag {
  enabled   = true
  overwrite = true
  file      = 'runInfo/dag.svg'
}

// Output resource and runtime reports for a workflow run
report {
  enabled   = true
  overwrite = true
  file      = 'runInfo/report.html'
}

timeline {
  enabled   = true
  overwrite = true
  file      = 'runInfo/timeline.html'
}

trace {
  enabled   = true
  overwrite = true
  file      = 'runInfo/trace.txt'
}

// Profiles -------------------------------------------------------------------

// Enable various profiles depending on compute infrastructure to be run on
// More info: https://www.nextflow.io/docs/latest/config.html#config-profiles
profiles {
  cluster { includeConfig "config/cluster.config" }
  test    { includeConfig "config/test.config" }
}