pom.xml

<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0"
    xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
    xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
    <modelVersion>4.0.0</modelVersion>

    <groupId>org.opencds.cqf.fhir</groupId>
    <artifactId>cqf-fhir</artifactId>
    <version>3.19.0-SNAPSHOT</version>
    <packaging>pom</packaging>
    <name>FHIR Clinical Reasoning</name>
    <description>FHIR Clinical Reasoning Implementations</description>
    <url>https://github.com/cqframework/clinical-reasoning/tree/master</url>


    <properties>
        <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
        <project.reporting.outputEncoding>UTF-8</project.reporting.outputEncoding>
        <maven.compiler.source>17</maven.compiler.source>
        <maven.compiler.target>17</maven.compiler.target>
        <maven.compiler.release>17</maven.compiler.release>

        <junit.version>5.10.2</junit.version>
        <slf4j.version>2.0.4</slf4j.version>
        <cql.version>3.22.0</cql.version>
        <jmh.version>1.36</jmh.version>
        <spring.version>6.1.14</spring.version>
        <hapi.version>8.0.0</hapi.version>
        <picocli.version>4.6.1</picocli.version>
        <guava.version>33.2.1-jre</guava.version>
        <error-prone.version>2.35.1</error-prone.version>
        <checkstyle.version>10.12.7</checkstyle.version>
    </properties>

    <licenses>
        <license>
            <name>The Apache Software License, Version 2.0</name>
            <url>http://www.apache.org/licenses/LICENSE-2.0.txt</url>
        </license>
    </licenses>

    <scm>
        <connection>scm:git:git://github.com/cqframework/clinical-reasoning.git</connection>
        <developerConnection>scm:git:ssh://github.com:cqframework/clinical-reasoning.git</developerConnection>
        <url>https://github.com/cqframework/clinical-reasoning/tree/master</url>
    </scm>

    <developers>
        <developer>
            <name>Jonathan Percival</name>
        </developer>
        <developer>
            <name>Justin McKelvy</name>
        </developer>
    </developers>

    <repositories>
        <repository>
            <id>oss-sonatype</id>
            <url>https://oss.sonatype.org/content/repositories/snapshots</url>
            <snapshots>
                <enabled>true</enabled>
            </snapshots>
        </repository>
        <repository>
            <id>oss-sonatype-public</id>
            <url>https://oss.sonatype.org/content/groups/public/</url>
        </repository>
    </repositories>

    <distributionManagement>
        <snapshotRepository>
            <id>ossrh</id>
            <url>https://oss.sonatype.org/content/repositories/snapshots</url>
        </snapshotRepository>
        <repository>
            <id>ossrh</id>
            <url>https://oss.sonatype.org/service/local/staging/deploy/maven2/</url>
        </repository>
    </distributionManagement>

    <modules>
        <module>cqf-fhir-api</module>
        <module>cqf-fhir-utility</module>
        <module>cqf-fhir-test</module>
        <module>cqf-fhir-cql</module>
        <module>cqf-fhir-cr</module>
        <module>cqf-fhir-cr-cli</module>
        <module>cqf-fhir-jackson</module>
        <module>cqf-fhir-jaxb</module>
        <module>cqf-fhir-bom</module>
        <!-- Replaces hapi-fhir-storage-cr -->
        <module>cqf-fhir-cr-hapi</module>

        <!-- TODO: See if we can retire this once we have all the mapping/adapters/runtimes in a
        consistent state -->
        <module>cqf-fhir-cr-spring</module>

        <!-- These don't publish a module, but ensures documentation snippets build correctly -->
        <module>docs</module>
        <module>cqf-fhir-benchmark</module>
    </modules>

    <dependencyManagement>
        <dependencies>
            <!-- HAPI depedencies -->
            <dependency>
                <groupId>ca.uhn.hapi.fhir</groupId>
                <artifactId>hapi-fhir-bom</artifactId>
                <version>${hapi.version}</version>
                <type>pom</type>
                <scope>import</scope>
            </dependency>

            <!--UCUM-->
            <dependency>
                <groupId>org.fhir</groupId>
                <artifactId>ucum</artifactId>
                <version>1.0.8</version>
            </dependency>

            <!-- CQL dependencies -->
            <dependency>
                <groupId>info.cqframework</groupId>
                <artifactId>engine</artifactId>
                <version>${cql.version}</version>
            </dependency>
            <dependency>
                <groupId>info.cqframework</groupId>
                <artifactId>cql-to-elm</artifactId>
                <version>${cql.version}</version>
            </dependency>
            <dependency>
                <groupId>info.cqframework</groupId>
                <artifactId>elm</artifactId>
                <version>${cql.version}</version>
            </dependency>
            <dependency>
                <groupId>info.cqframework</groupId>
                <artifactId>model</artifactId>
                <version>${cql.version}</version>
            </dependency>
            <dependency>
                <groupId>info.cqframework</groupId>
                <artifactId>model-jackson</artifactId>
                <version>${cql.version}</version>
            </dependency>
            <dependency>
                <groupId>info.cqframework</groupId>
                <artifactId>elm-jackson</artifactId>
                <version>${cql.version}</version>
            </dependency>
            <dependency>
                <groupId>info.cqframework</groupId>
                <artifactId>model-jaxb</artifactId>
                <version>${cql.version}</version>
            </dependency>
            <dependency>
                <groupId>info.cqframework</groupId>
                <artifactId>elm-jaxb</artifactId>
                <version>${cql.version}</version>
            </dependency>
            <dependency>
                <groupId>info.cqframework</groupId>
                <artifactId>engine-fhir</artifactId>
                <version>${cql.version}</version>
            </dependency>
            <dependency>
                <groupId>info.cqframework</groupId>
                <artifactId>quick</artifactId>
                <version>${cql.version}</version>
            </dependency>
            <dependency>
                <groupId>info.cqframework</groupId>
                <artifactId>fhir-r4</artifactId>
                <version>${cql.version}</version>
            </dependency>
            <dependency>
                <groupId>info.cqframework</groupId>
                <artifactId>elm-fhir</artifactId>
                <version>${cql.version}</version>
            </dependency>
            <dependency>
                <groupId>info.cqframework</groupId>
                <artifactId>cqf-fhir</artifactId>
                <version>${cql.version}</version>
            </dependency>
            <dependency>
                <groupId>info.cqframework</groupId>
                <artifactId>cqf-fhir-npm</artifactId>
                <version>${cql.version}</version>
            </dependency>

            <!-- Engine JAXB -->
            <dependency>
                <groupId>org.eclipse.persistence</groupId>
                <artifactId>org.eclipse.persistence.moxy</artifactId>
                <version>2.7.13</version>
            </dependency>

            <!-- Guava-->
            <dependency>
                <groupId>com.google.guava</groupId>
                <artifactId>guava</artifactId>
                <version>${guava.version}</version>
            </dependency>

            <!-- Spring -->
            <dependency>
                <groupId>org.springframework</groupId>
                <artifactId>spring-context</artifactId>
                <version>${spring.version}</version>
            </dependency>
            <dependency>
                <groupId>org.springframework</groupId>
                <artifactId>spring-core</artifactId>
                <version>${spring.version}</version>
            </dependency>
            <dependency>
                <groupId>org.springframework</groupId>
                <artifactId>spring-beans</artifactId>
                <version>${spring.version}</version>
            </dependency>
            <dependency>
                <groupId>org.springframework</groupId>
                <artifactId>spring-expression</artifactId>
                <version>${spring.version}</version>
            </dependency>

            <!-- CLI -->
            <dependency>
                <groupId>info.picocli</groupId>
                <artifactId>picocli</artifactId>
                <version>${picocli.version}</version>
            </dependency>

            <!-- Generated annotation -->
            <dependency>
                <groupId>jakarta.annotation</groupId>
                <artifactId>jakarta.annotation-api</artifactId>
                <version>2.1.1</version>
            </dependency>

            <!-- NPM Packaging Dependencies -->
            <dependency>
                <groupId>org.apache.commons</groupId>
                <artifactId>commons-compress</artifactId>
                <version>1.26.0</version>
            </dependency>

            <!-- BundleResources requirement -->
            <dependency>
                <groupId>commons-codec</groupId>
                <artifactId>commons-codec</artifactId>
                <!-- Specific version needed for cqf-fhir-storage-cr tests -->
                <version>1.15</version>
            </dependency>

            <!-- Logging -->
            <dependency>
                <groupId>org.slf4j</groupId>
                <artifactId>slf4j-api</artifactId>
                <version>${slf4j.version}</version>
            </dependency>

            <!-- Benchmarking -->
            <dependency>
                <groupId>org.openjdk.jmh</groupId>
                <artifactId>jmh-core</artifactId>
                <version>${jmh.version}</version>
            </dependency>

            <!-- Test Dependencies -->
            <dependency>
                <groupId>org.junit</groupId>
                <artifactId>junit-bom</artifactId>
                <version>${junit.version}</version>
                <type>pom</type>
                <scope>import</scope>
            </dependency>
            <dependency>
                <groupId>org.slf4j</groupId>
                <artifactId>jcl-over-slf4j</artifactId>
                <version>${slf4j.version}</version>
                <scope>test</scope>
            </dependency>
            <dependency>
                <groupId>org.slf4j</groupId>
                <artifactId>slf4j-simple</artifactId>
                <version>${slf4j.version}</version>
                <optional>true</optional>
                <scope>test</scope>
            </dependency>
            <dependency>
                <groupId>com.github.valfirst</groupId>
                <artifactId>slf4j-test</artifactId>
                <version>3.0.1</version>
                <scope>test</scope>
            </dependency>
            <dependency>
                <groupId>org.reflections</groupId>
                <artifactId>reflections</artifactId>
                <version>0.10.2</version>
                <scope>test</scope>
            </dependency>
            <dependency>
                <groupId>org.hamcrest</groupId>
                <artifactId>hamcrest-all</artifactId>
                <version>1.3</version>
                <scope>test</scope>
            </dependency>
            <dependency>
                <groupId>org.mockito</groupId>
                <artifactId>mockito-core</artifactId>
                <version>5.5.0</version>
                <scope>test</scope>
            </dependency>
            <dependency>
                <groupId>org.mockito</groupId>
                <artifactId>mockito-junit-jupiter</artifactId>
                <version>5.5.0</version>
                <scope>test</scope>
            </dependency>
            <dependency>
                <groupId>org.springframework</groupId>
                <artifactId>spring-test</artifactId>
                <version>${spring.version}</version>
                <scope>test</scope>
            </dependency>

            <!-- JSON Comparisons ignoring property order, whitespaces/tabs, etc. -->
            <dependency>
                <groupId>org.skyscreamer</groupId>
                <artifactId>jsonassert</artifactId>
                <version>1.5.1</version>
                <scope>test</scope>
            </dependency>

            <!-- Testing of equality and hashCode -->
            <dependency>
                <groupId>nl.jqno.equalsverifier</groupId>
                <artifactId>equalsverifier</artifactId>
                <version>3.15.6</version>
                <scope>test</scope>
            </dependency>
        </dependencies>
    </dependencyManagement>

    <!-- Dependencies shared by all projects -->
    <dependencies>
        <dependency>
            <groupId>jakarta.annotation</groupId>
            <artifactId>jakarta.annotation-api</artifactId>
        </dependency>
        <dependency>
            <groupId>org.slf4j</groupId>
            <artifactId>slf4j-api</artifactId>
        </dependency>
        <dependency>
            <groupId>org.junit.jupiter</groupId>
            <artifactId>junit-jupiter</artifactId>
            <scope>test</scope>
        </dependency>
        <dependency>
            <groupId>org.hamcrest</groupId>
            <artifactId>hamcrest-all</artifactId>
            <scope>test</scope>
        </dependency>
        <dependency>
            <groupId>org.mockito</groupId>
            <artifactId>mockito-core</artifactId>
            <scope>test</scope>
        </dependency>
        <dependency>
            <groupId>nl.jqno.equalsverifier</groupId>
            <artifactId>equalsverifier</artifactId>
            <scope>test</scope>
        </dependency>
    </dependencies>

    <build>
        <defaultGoal>package</defaultGoal>
        <pluginManagement>
            <plugins>
                <plugin>
                    <groupId>org.codehaus.mojo</groupId>
                    <artifactId>buildnumber-maven-plugin</artifactId>
                    <version>3.2.1</version>
                </plugin>
                <plugin>
                    <?m2e execute onConfiguration,onIncremental?>
                    <groupId>org.apache.maven.plugins</groupId>
                    <artifactId>maven-checkstyle-plugin</artifactId>
                    <version>3.3.1</version>
                    <configuration>
                        <excludeGeneratedSources>true</excludeGeneratedSources>
                        <configLocation>config/checkstyle.xml</configLocation>
                    </configuration>
                    <dependencies>
                        <dependency>
                            <groupId>com.puppycrawl.tools</groupId>
                            <artifactId>checkstyle</artifactId>
                            <version>${checkstyle.version}</version>
                        </dependency>
                    </dependencies>
                    <executions>
                        <execution>
                            <phase>validate</phase>
                            <goals>
                                <goal>check</goal>
                            </goals>
                        </execution>
                    </executions>
                </plugin>
                <plugin>
                    <groupId>org.apache.maven.plugins</groupId>
                    <artifactId>maven-deploy-plugin</artifactId>
                    <version>3.1.1</version>
                </plugin>
                <plugin>
                    <groupId>com.diffplug.spotless</groupId>
                    <artifactId>spotless-maven-plugin</artifactId>
                    <version>2.39.0</version>
                    <configuration>
                        <java>
                            <palantirJavaFormat>
                                <version>2.38.0</version>
                            </palantirJavaFormat>
                        </java>
                    </configuration>
                </plugin>
                <plugin>
                    <groupId>org.apache.maven.plugins</groupId>
                    <artifactId>maven-compiler-plugin</artifactId>
                    <version>3.13.0</version>
                    <configuration>
                        <failOnWarning>true</failOnWarning>
                        <showWarnings>true</showWarnings>
                        <compilerArgs>
                            <arg>-XDcompilePolicy=simple</arg>
                            <!-- TODO: Ramp up error prone checkts to include warnings as well -->
                            <arg>-Xplugin:ErrorProne -XepDisableAllWarnings</arg>
                        </compilerArgs>
                        <annotationProcessorPaths>
                            <path>
                                <groupId>com.google.errorprone</groupId>
                                <artifactId>error_prone_core</artifactId>
                                <version>${error-prone.version}</version>
                            </path>
                        </annotationProcessorPaths>
                    </configuration>
                </plugin>
                <plugin>
                    <groupId>org.apache.maven.plugins</groupId>
                    <artifactId>maven-jar-plugin</artifactId>
                    <version>3.1.2</version>
                    <configuration>
                        <archive>
                            <manifest>
                                <addDefaultImplementationEntries>true</addDefaultImplementationEntries>
                                <addDefaultSpecificationEntries>true</addDefaultSpecificationEntries>
                            </manifest>
                        </archive>
                    </configuration>
                </plugin>
                <plugin>
                    <groupId>org.apache.maven.plugins</groupId>
                    <artifactId>maven-javadoc-plugin</artifactId>
                    <version>3.3.1</version>
                    <configuration>
                        <source>17</source>
                        <release>17</release>
                        <doclint>-missing</doclint>
                        <quiet>true</quiet>
                        <detectOfflineLinks>false</detectOfflineLinks>
                    </configuration>
                    <executions>
                        <execution>
                            <id>attach-javadocs</id>
                            <goals>
                                <goal>jar</goal>
                            </goals>
                        </execution>
                    </executions>
                </plugin>
                <plugin>
                    <groupId>org.apache.maven.plugins</groupId>
                    <artifactId>maven-source-plugin</artifactId>
                    <version>3.2.1</version>
                    <executions>
                        <execution>
                            <id>attach-sources</id>
                            <goals>
                                <goal>jar</goal>
                            </goals>
                        </execution>
                    </executions>
                </plugin>
                <plugin>
                    <groupId>org.apache.maven.plugins</groupId>
                    <artifactId>maven-gpg-plugin</artifactId>
                    <version>1.6</version>
                    <executions>
                        <execution>
                            <id>sign-artifacts</id>
                            <phase>verify</phase>
                            <goals>
                                <goal>sign</goal>
                            </goals>
                        </execution>
                    </executions>
                </plugin>
                <plugin>
                    <groupId>org.apache.maven.plugins</groupId>
                    <artifactId>maven-shade-plugin</artifactId>
                    <version>3.2.4</version>
                </plugin>
                <plugin>
                    <groupId>org.sonatype.plugins</groupId>
                    <artifactId>nexus-staging-maven-plugin</artifactId>
                    <version>1.6.13</version>
                    <extensions>true</extensions>
                    <configuration>
                        <serverId>ossrh</serverId>
                        <nexusUrl>https://oss.sonatype.org/</nexusUrl>
                    </configuration>
                </plugin>
                <plugin>
                    <groupId>org.apache.maven.plugins</groupId>
                    <artifactId>maven-enforcer-plugin</artifactId>
                    <version>3.1.0</version>
                    <executions>
                        <execution>
                            <id>enforce-no-snapshots</id>
                            <goals>
                                <goal>enforce</goal>
                            </goals>
                            <configuration>
                                <rules>
                                    <requireReleaseVersion>
                                        <message>No Snapshot Versions Allowed!</message>
                                    </requireReleaseVersion>
                                    <requireReleaseDeps>
                                        <message>No Snapshot Dependencies Allowed!</message>
                                    </requireReleaseDeps>
                                </rules>
                                <fail>true</fail>
                            </configuration>
                        </execution>
                    </executions>
                </plugin>
                <plugin>
                    <groupId>org.apache.maven.plugins</groupId>
                    <artifactId>maven-failsafe-plugin</artifactId>
                    <version>2.22.2</version>
                    <configuration>
                        <redirectTestOutputToFile>true</redirectTestOutputToFile>
                    </configuration>
                    <executions>
                        <execution>
                            <goals>
                                <goal>integration-test</goal>
                                <goal>verify</goal>
                            </goals>
                        </execution>
                    </executions>
                </plugin>
                <plugin>
                    <groupId>org.apache.maven.plugins</groupId>
                    <artifactId>maven-surefire-plugin</artifactId>
                    <version>2.22.2</version>
                    <configuration>
                        <redirectTestOutputToFile>true</redirectTestOutputToFile>
                    </configuration>
                </plugin>
                <plugin>
                    <groupId>org.codehaus.mojo</groupId>
                    <artifactId>animal-sniffer-maven-plugin</artifactId>
                    <version>1.23</version>
                    <configuration>
                        <signature>
                            <groupId>com.toasttab.android</groupId>
                            <artifactId>gummy-bears-api-34</artifactId>
                            <version>0.10.0</version>
                        </signature>
                    </configuration>
                    <executions>
                        <execution>
                            <id>check-android-34-compliance</id>
                            <phase>test</phase>
                            <goals>
                                <goal>check</goal>
                            </goals>
                        </execution>
                    </executions>
                </plugin>
                <plugin>
                    <groupId>org.jacoco</groupId>
                    <artifactId>jacoco-maven-plugin</artifactId>
                    <version>0.8.12</version>
                    <executions>
                        <execution>
                            <goals>
                                <goal>prepare-agent</goal>
                            </goals>
                        </execution>
                        <execution>
                            <id>report</id>
                            <phase>test</phase>
                            <goals>
                                <goal>report</goal>
                            </goals>
                        </execution>
                        <execution>
                            <id>jacoco-site-aggregate</id>
                            <phase>verify</phase>
                            <goals>
                                <goal>report-aggregate</goal>
                            </goals>
                        </execution>
                    </executions>
                </plugin>
            </plugins>
        </pluginManagement>
        <plugins>
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-checkstyle-plugin</artifactId>
            </plugin>
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-compiler-plugin</artifactId>
            </plugin>
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-surefire-plugin</artifactId>
            </plugin>
            <plugin>
                <groupId>org.codehaus.mojo</groupId>
                <artifactId>animal-sniffer-maven-plugin</artifactId>
            </plugin>
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-failsafe-plugin</artifactId>
            </plugin>
        </plugins>
    </build>
    <profiles>
        <profile>
            <id>package</id>
            <build>
                <plugins>
                    <plugin>
                        <groupId>org.apache.maven.plugins</groupId>
                        <artifactId>maven-source-plugin</artifactId>
                    </plugin>
                    <plugin>
                        <groupId>org.apache.maven.plugins</groupId>
                        <artifactId>maven-javadoc-plugin</artifactId>
                    </plugin>
                    <plugin>
                        <groupId>org.jacoco</groupId>
                        <artifactId>jacoco-maven-plugin</artifactId>
                    </plugin>
                </plugins>
            </build>
        </profile>
        <profile>
            <id>release</id>
            <build>
                <plugins>
                    <plugin>
                        <groupId>org.apache.maven.plugins</groupId>
                        <artifactId>maven-source-plugin</artifactId>
                    </plugin>
                    <plugin>
                        <groupId>org.apache.maven.plugins</groupId>
                        <artifactId>maven-javadoc-plugin</artifactId>
                    </plugin>
                    <plugin>
                        <groupId>org.jacoco</groupId>
                        <artifactId>jacoco-maven-plugin</artifactId>
                    </plugin>
                    <plugin>
                        <groupId>org.apache.maven.plugins</groupId>
                        <artifactId>maven-enforcer-plugin</artifactId>
                    </plugin>
                    <plugin>
                        <groupId>org.apache.maven.plugins</groupId>
                        <artifactId>maven-gpg-plugin</artifactId>
                    </plugin>
                    <plugin>
                        <groupId>org.sonatype.plugins</groupId>
                        <artifactId>nexus-staging-maven-plugin</artifactId>
                    </plugin>
                </plugins>
            </build>
        </profile>
    </profiles>
</project>