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MetaSBT

Welcome to the MetaSBT wiki!

MetaSBT is a scalable framework for automatically indexing microbial genomes and accurately characterizing metagenome-assembled genomes with Sequence Bloom Trees.

Contents

• Getting started
  • Installing MetaSBT
  • Dependencies
• Available features
  • index: building a reference database
  • boundaries: defining clusters boundaries
  • profile: characterizing genomes and metagenome-assembled genomes
  • update: updating the database
  • report: building the database snapshot report
• Installing public pre-built databases
• Unlocking quantitative profiling of unknown species with kraken2
• Integrating MetaSBT in Galaxy