- Skip tests that used
vegetarian
package, which was off CRAN. hill_phylo
has an argumentreturn_dt
now, so that users can decide whether to return the Phylogenetic Hill numbers Dt, default isFALSE
.
hill_phylo
set of functions are now much faster after getting rid ofade4::newick2phylog()
.- Replaced all
.
in arguments with_
to standardize styles. hill_phylo_parti_pairwise
now calculate the node/tips by site matrix first to speed things up.- Added progress bar to all
hill_xxx_parti_pairwise
functions with.progress
argument, which can be set toFALSE
to turn it off.
- Added a
NEWS.md
file to track changes to the package. hill_func
andhill_func_parti
no longer standardize distance matrix to have max value of 1 by default.- set
stand_dij = TRUE
if want to do so.
- set
hill_func_parti
function now reports site similarity instead of dissimilarity, to be consistent with thehill_taxa_parti
functions. Make sure to change your interpretations.- Added
hill_phylo
functions.