Skip to content
New issue

Have a question about this project? # for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “#”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? # to your account

[BUG] Query error: cell missing value {} #139

Open
mengzhensun opened this issue Aug 13, 2020 · 0 comments
Open

[BUG] Query error: cell missing value {} #139

mengzhensun opened this issue Aug 13, 2020 · 0 comments
Labels
bug Something isn't working

Comments

@mengzhensun
Copy link

mengzhensun commented Aug 13, 2020

Describe the bug
The python api throws the missing value error to my SPARQL query:

SELECT ?name ?proteinExpressionScore
WHERE {
  ?a typeOf HumanProteinOccurrence .
  ?a name ?name .
  ?a proteinExpressionScore ?proteinExpressionScore .
}
LIMIT 2

To Reproduce
Steps to reproduce the behavior:

  1. Go to a Colab notebook
  2. run
!pip install --upgrade --quiet datacommons
# Import Data Commons
import datacommons as dc
root = 'https://api.datacommons.org'

SELECT ?name ?proteinExpressionScore
WHERE {
  ?a typeOf HumanProteinOccurrence .
  ?a name ?name .
  ?a proteinExpressionScore ?proteinExpressionScore .
}
LIMIT 2
  1. See error

Expected behavior

result = [{'?name': '2ABD_HUMAN_Pancreas_ExocrineGlandularCells', '?proteinExpressionScore': 'ProteinExpressionLow'},
 {'?name': '2A5G_HUMAN_Bronchus_RespiratoryEpithelialCells', '?proteinExpressionScore': 'ProteinExpressionMedium'}]

Screenshots
Missing value error: https://screenshot.googleplex.com/fa799d8a-84fb-4972-a73d-c680861d19af
Response error: https://screenshot.googleplex.com/54176345-fe07-4c5d-91aa-01536ab01141
Additional context
Response error occurs sometimes for the same query as well, as shown in the second screenshoot.

@mengzhensun mengzhensun added the bug Something isn't working label Aug 13, 2020
# for free to join this conversation on GitHub. Already have an account? # to comment
Labels
bug Something isn't working
Projects
None yet
Development

No branches or pull requests

1 participant