Numpy error on make start

[thinkh]

Environment

• Release number or git hash: bec075f
• Browser: n/a
• Deployed / Local: local

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Steps to reproduce the bug

1. rm -rf .venv && python3.10 -m venv .venv && source .venv/bin/activate && pip install --upgrade uv && make develop
2. make start

Observed Behavior

The server starts but shows some numpy errors. The server is usable afterwards.

(.venv) ➜  visyn_core git:(develop) make start                                                                                                       
python visyn_core
INFO:     Will watch for changes in these directories: ['/home/holger/w/datavisyn/visyn_core/visyn_core']
INFO:     Uvicorn running on http://0.0.0.0:9000 (Press CTRL+C to quit)
INFO:     Started reloader process [92344] using WatchFiles
INFO:     2024-08-13 17:45:51 | visyn_core.server.visyn_server | Starting visyn_server in production mode
INFO:     2024-08-13 17:45:51 |       visyn_core.plugin.parser | Discovered 1 plugin(s): visyn_core
INFO:     2024-08-13 17:45:51 |       visyn_core.plugin.parser | Plugin visyn_core registered 8 extension(s)
INFO:     2024-08-13 17:45:52 | visyn_core.dbmigration.manager | Initializing DBMigrationManager with no plugins
INFO:     2024-08-13 17:45:52 |    visyn_core.security.manager | Initializing SecurityManager with DummyStore
INFO:     2024-08-13 17:45:52 |  visyn_core.id_mapping.manager | Initializing MappingManager with 0 provider(s)
INFO:     2024-08-13 17:45:52 | visyn_core.server.visyn_server | Registering 0 legacy namespace(s) via WSGIMiddleware
INFO:     2024-08-13 17:45:52 | visyn_core.server.visyn_server | Registering 3 FastAPI router(s)

A module that was compiled using NumPy 1.x cannot be run in
NumPy 2.0.1 as it may crash. To support both 1.x and 2.x
versions of NumPy, modules must be compiled with NumPy 2.0.
Some module may need to rebuild instead e.g. with 'pybind11>=2.12'.

If you are a user of the module, the easiest solution will be to
downgrade to 'numpy<2' or try to upgrade the affected module.
We expect that some modules will need time to support NumPy 2.

Traceback (most recent call last):  File "<string>", line 1, in <module>
  File "/usr/lib/python3.10/multiprocessing/spawn.py", line 116, in spawn_main
    exitcode = _main(fd, parent_sentinel)
  File "/usr/lib/python3.10/multiprocessing/spawn.py", line 129, in _main
    return self._bootstrap(parent_sentinel)
  File "/usr/lib/python3.10/multiprocessing/process.py", line 314, in _bootstrap
    self.run()
  File "/usr/lib/python3.10/multiprocessing/process.py", line 108, in run
    self._target(*self._args, **self._kwargs)
  File "/home/holger/w/datavisyn/visyn_core/.venv/lib/python3.10/site-packages/uvicorn/_subprocess.py", line 80, in subprocess_started
    target(sockets=sockets)
  File "/home/holger/w/datavisyn/visyn_core/.venv/lib/python3.10/site-packages/uvicorn/server.py", line 65, in run
    return asyncio.run(self.serve(sockets=sockets))
  File "/usr/lib/python3.10/asyncio/runners.py", line 44, in run
    return loop.run_until_complete(main)
  File "/home/holger/w/datavisyn/visyn_core/.venv/lib/python3.10/site-packages/uvicorn/server.py", line 69, in serve
    await self._serve(sockets)
  File "/home/holger/w/datavisyn/visyn_core/.venv/lib/python3.10/site-packages/uvicorn/server.py", line 76, in _serve
    config.load()
  File "/home/holger/w/datavisyn/visyn_core/.venv/lib/python3.10/site-packages/uvicorn/config.py", line 434, in load
    self.loaded_app = import_from_string(self.app)
  File "/home/holger/w/datavisyn/visyn_core/.venv/lib/python3.10/site-packages/uvicorn/importer.py", line 19, in import_from_string
    module = importlib.import_module(module_str)
  File "/usr/lib/python3.10/importlib/__init__.py", line 126, in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
  File "/home/holger/w/datavisyn/visyn_core/visyn_core/dev_app.py", line 8, in <module>
    app = create_visyn_server(
  File "/home/holger/w/datavisyn/visyn_core/visyn_core/server/visyn_server.py", line 192, in create_visyn_server
    p.plugin.init_app(app)
  File "/home/holger/w/datavisyn/visyn_core/visyn_core/__init__.py", line 12, in init_app
    from .rdkit import img_api
  File "/home/holger/w/datavisyn/visyn_core/visyn_core/rdkit/img_api.py", line 2, in <module>
    from rdkit.Chem import Mol  # type: ignore
  File "/home/holger/w/datavisyn/visyn_core/.venv/lib/python3.10/site-packages/rdkit/Chem/__init__.py", line 15, in <module>
    from rdkit import DataStructs, RDConfig, rdBase
  File "/home/holger/w/datavisyn/visyn_core/.venv/lib/python3.10/site-packages/rdkit/DataStructs/__init__.py", line 13, in <module>
    from rdkit.DataStructs import cDataStructs
AttributeError: _ARRAY_API not found

INFO:     2024-08-13 17:45:53 |                  uvicorn.error | Started server process [92347]
INFO:     2024-08-13 17:45:53 |                  uvicorn.error | Waiting for application startup.
INFO:     2024-08-13 17:45:53 |                  uvicorn.error | Application startup complete.

Expected Behavior

Show no errors on app startup.

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