Skip to content

Latest commit

 

History

History
26 lines (24 loc) · 831 Bytes

README.md

File metadata and controls

26 lines (24 loc) · 831 Bytes

Setup (remotehost)

sudo python3 -m pip install mlflow azure-storage-blob
export AZURE_STORAGE_CONNECTION_STRING="XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX"
mlflow server --host 0.0.0.0 --default-artifact-root wasbs://XXXXX@YYYYY.blob.core.windows.net/

Setup (localhost)

sudo apt install python3-pip python3-venv
cd ~
python3 -m venv venv-ecell
source venv-ecell/bin/activate
pip install -U pip
pip install mlflow toml scikit-image plotly kaleido azure-storage-blob
pip install git+git://github.com/ecell/scopyon.git@99436fbfd34bb684966846eba75b206c2806f69c
export AZURE_STORAGE_CONNECTION_STRING="XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX"

Running experiment (localhost)

git clone https://github.com/ecell/bioimage_workflows
cd bioimage_workflows
git checkout -t origin/nocode
python describe_workflow.py