diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/analysis/AbstractAnalysisRunner.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/analysis/AbstractAnalysisRunner.java index 258eeb8c2..39533b335 100644 --- a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/analysis/AbstractAnalysisRunner.java +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/analysis/AbstractAnalysisRunner.java @@ -131,7 +131,7 @@ public AnalysisResults run(Sample sample, Analysis analysis) { List genesToScore = variantsLoaded ? getGenesWithVariants(allGenes) : allGenes.values().stream().filter(genesToScore()).toList(); // Temporarily add a new PValueGeneScorer so as not to break semver will revert to RawScoreGeneScorer in 14.0.0 CombinedScorePvalueCalculator combinedScorePvalueCalculator = buildCombinedScorePvalueCalculator(sample, analysis, genesToScore.size()); - GeneScorer geneScorer = new PvalueGeneScorer(probandIdentifier, sample.getSex(), inheritanceModeAnnotator, combinedScorePvalueCalculator, genomeAnalysisService); + GeneScorer geneScorer = new PvalueGeneScorer(probandIdentifier, sample.getSex(), inheritanceModeAnnotator, combinedScorePvalueCalculator); logger.info("Scoring genes"); List genes = geneScorer.scoreGenes(genesToScore);