manifest.imjoy.json

{
 "name": "ImJoy Repository",
 "description": "ImJoy plugin repository.",
 "uri_root": "",
 "version": "0.2.0",
 "plugins": [
  {
   "name": "FISH-QUANT",
   "type": "native-python",
   "version": "0.0.20",
   "description": "Process smFISH images.",
   "tags": [
    "stable",
    "dev"
   ],
   "ui": "",
   "cover": "",
   "inputs": null,
   "outputs": null,
   "flags": [
    "single-instance",
    "allow-detach"
   ],
   "icon": "extension",
   "api_version": "0.1.8",
   "env": [
    {
     "type": "binder",
     "spec": "fish-quant/fq-imjoy/binder",
     "skip_requirements": true
    }
   ],
   "permissions": [],
   "requirements": {
    "stable": [
     "big-fish==0.6.2"
    ],
    "dev": [
     ""
    ]
   },
   "dependencies": [
    "fish-quant/fq-imjoy:FQ-interface"
   ],
   "runnable": true,
   "uri": "imjoy-plugins\\FISH-quant.imjoy.html"
  },
  {
   "name": "FQ-interface",
   "type": "window",
   "tags": [],
   "ui": "",
   "version": "0.0.14",
   "cover": "",
   "description": "User-interface of FQ.",
   "icon": "extension",
   "inputs": null,
   "outputs": null,
   "api_version": "0.1.8",
   "env": "",
   "permissions": [],
   "requirements": [
    "https://cdn.materialdesignicons.com/2.5.94/css/materialdesignicons.min.css",
    "https://cdnjs.cloudflare.com/ajax/libs/vue/2.6.10/vue.min.js",
    "https://cdn.jsdelivr.net/npm/bulma@0.8.2/css/bulma.min.css",
    "https://cdnjs.cloudflare.com/ajax/libs/plotly.js/1.51.1/plotly.min.js",
    "https://unpkg.com/buefy/dist/buefy.min.js",
    "https://unpkg.com/buefy/dist/buefy.min.css"
   ],
   "dependencies": [],
   "runnable": false,
   "defaults": {
    "w": 20,
    "h": 20
   },
   "uri": "imjoy-plugins\\FQ-interface.imjoy.html"
  },
  {
   "name": "SNR-calculation",
   "type": "native-python",
   "version": "0.0.2",
   "description": "Calculate SNR of all spots in an image.",
   "tags": [
    "stable",
    "dev"
   ],
   "ui": [
    "<span style='font-weight: 550; color:#666362'>Path SPOTS</span>: {id: 'path_spots', type: 'string', placeholder: 'paste-path-to-spot-results'}",
    "<span style='font-weight: 550; color:#666362'>Path IMAGES</span>: {id: 'path_images', type: 'string', placeholder: 'analysis˃˃acquisition'}",
    "<span style='font-weight: 550; color:#666362'>Path SAVE</span>: {id: 'path_save', type: 'string', placeholder: 'spot_detection˃˃snr'}",
    "<span style='font-weight: 550; color:#666362'>Suffix spots</span>: {id: 'suffix_spots', type: 'string', placeholder: '__spots.csv'}",
    "<span style='font-weight: 550; color:#666362'>Suffix images</span>: {id: 'suffix_images', type: 'string', placeholder: '.tif'}",
    "<span style='font-weight: 550; color:#666362'>Crop size [(Z),Y,X]:</span>: {id: 'crop_spot', type: 'string', placeholder: '4,4,4'}",
    "<span style='font-weight: 550; color:#666362'>Width bgd [(Z),Y,X]:</span>: {id: 'w_bgd', type: 'string', placeholder: '1,1,1'}"
   ],
   "cover": "",
   "inputs": null,
   "outputs": null,
   "flags": [],
   "icon": "extension",
   "api_version": "0.1.8",
   "env": "",
   "permissions": [],
   "requirements": {
    "stable": [
     "big-fish==0.4.0"
    ],
    "dev": [
     ""
    ]
   },
   "dependencies": [],
   "uri": "imjoy-plugins\\SNR-calculation.imjoy.html"
  }
 ],
 "collections": []
}