Skip to content
@flatironinstitute

Flatiron Institute

Popular repositories Loading

  1. CaImAn CaImAn Public

    Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

    Python 628 365

  2. DeepFRI DeepFRI Public

    Deep functional residue identification

    Python 300 76

  3. finufft finufft Public

    Non-uniform fast Fourier transform library of types 1,2,3 in dimensions 1,2,3

    C++ 288 73

  4. CaImAn-MATLAB CaImAn-MATLAB Public

    Complete Matlab pipeline for large scale calcium imaging data analysis

    MATLAB 251 146

  5. NoRMCorre NoRMCorre Public

    Matlab routines for online non-rigid motion correction of calcium imaging data

    MATLAB 141 88

  6. deepblast deepblast Public

    Neural Networks for Protein Sequence Alignment

    Python 110 19

Repositories

Showing 10 of 175 repositories
  • nemos Public

    NEural MOdelS, a statistical modeling framework for neuroscience.

    flatironinstitute/nemos’s past year of commit activity
    Python 77 MIT 7 81 5 Updated Sep 27, 2024
  • MutantAutoMate Public
    flatironinstitute/MutantAutoMate’s past year of commit activity
    Python 0 0 4 2 Updated Sep 27, 2024
  • sciware Public

    Learning materials for scientific software development

    flatironinstitute/sciware’s past year of commit activity
    HTML 77 34 2 0 Updated Sep 27, 2024
  • finufft Public

    Non-uniform fast Fourier transform library of types 1,2,3 in dimensions 1,2,3

    flatironinstitute/finufft’s past year of commit activity
    C++ 288 73 49 (3 issues need help) 8 Updated Sep 26, 2024
  • neurosift Public

    Browser-based NWB visualization and DANDI exploration

    flatironinstitute/neurosift’s past year of commit activity
    TypeScript 42 Apache-2.0 6 51 1 Updated Sep 26, 2024
  • ManifoldEM Public

    Python package for determination of conformational continua of macromolecules from single-particle cryo-EM data

    flatironinstitute/ManifoldEM’s past year of commit activity
    Python 4 GPL-3.0 0 3 0 Updated Sep 26, 2024
  • Cryo-EM-Heterogeneity-Challenge-1 Public

    The Inaugural Flatiron Institute Cryo-EM Heterogeneity Community Challenge

    flatironinstitute/Cryo-EM-Heterogeneity-Challenge-1’s past year of commit activity
    Jupyter Notebook 5 MIT 0 17 3 Updated Sep 26, 2024
  • spack Public Forked from spack/spack

    A flexible package manager that supports multiple versions, configurations, platforms, and compilers.

    flatironinstitute/spack’s past year of commit activity
    Python 2 2,278 0 13 Updated Sep 25, 2024
  • stan-playground Public

    Run Stan models in the browser

    flatironinstitute/stan-playground’s past year of commit activity
    TypeScript 5 Apache-2.0 1 14 1 Updated Sep 24, 2024
  • aLENS_analysis Public

    Postprocessing & analysis scripts for aLENS data

    flatironinstitute/aLENS_analysis’s past year of commit activity
    Jupyter Notebook 0 2 0 0 Updated Sep 24, 2024
View all repositories

Top languages

Loading…

Most used topics

Loading…