Skip to content

Latest commit

 

History

History
14 lines (12 loc) · 851 Bytes

README.md

File metadata and controls

14 lines (12 loc) · 851 Bytes
Raw

PaintSHOP DNA QC

R script for assessing the uniqueness of DNA FISH oligo probes' mapping to dm6 genome. Probes are generated in PaintSHOP and loaded to the 'data' folder. Run the script 'probeQC.R' which will produce these plots in 'plots' directory: karyoplot and genomic probe counts

Requirements

  • conda and mamba
  • conda environment 'align' with bowtie2 and samtools installed 
    conda config --add channels defaults
conda config --add channels bioconda
conda config --add channels conda-forge
conda config --set channel_priority strict
mamba create -n align -c bioconda bowtie2 samtools