-
Notifications
You must be signed in to change notification settings - Fork 1
/
Copy pathcompile.log.10-03-2017.try4
531 lines (510 loc) · 79.2 KB
/
compile.log.10-03-2017.try4
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
None of WRF_EM_CORE, WRF_NMM_CORE,
specified in shell environment....
==============================================================================================
V3.8
Compiling: WRF_EM_CORE
WRFIO_NCD_LARGE_FILE_SUPPORT=1
Linux fe3 2.6.32-642.15.1.el6.x86_64 #1 SMP Fri Feb 24 14:31:22 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux
Intel(R) Fortran Intel(R) 64 Compiler XE for applications running on Intel(R) 64, Version 15.0.3.187 Build 20150407
Copyright (C) 1985-2015 Intel Corporation. All rights reserved.
==============================================================================================
setting parallel make -j 2
==============================================================================================
The following indicate the compilers selected to build the WRF system
Serial Fortran compiler (mostly for tool generation):
which SFC
/apps/intel/composer_xe_2015.3.187/bin/intel64/ifort
Serial C compiler (mostly for tool generation):
which SCC
/apps/intel/composer_xe_2015.3.187/bin/intel64/icc
Fortran compiler for the model source code:
which FC
/apps/intel/impi/5.1.1.109/intel64/bin/mpiifort
Will use 'time' to report timing information
C compiler for the model source code:
which CC
/apps/intel/impi/5.1.1.109/intel64/bin/mpiicc
==============================================================================================
make -i -r MODULE_DIRS="-I../dyn_em -I../dyn_nmm -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/esmf_time_f90 -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/main -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_netcdf -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_int -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/frame -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/share -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/phys -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/chem -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/inc -I/apps/netcdf/3.6.3-intel/include " ext
make[1]: Entering directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord'
--------------------------------------
( cd frame ; make -i -r externals )
make[2]: Entering directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/frame'
( cd /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/esmf_time_f90 ; \
make -j 2 FC="ifort -real-size `expr 8 \* 4` -i4 -vec-threshold0 -override_limits -qno-opt-dynamic-align -ip -w -ftz -align all -fno-alias -FR -convert big_endian " RANLIB="ranlib" \
CPP="/lib/cpp -P -C -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/inc -I. -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_FUNC -DDM_PARALLEL -DNETCDF -DPNETCDF -DPNETCDF_QUILT -DHARDCODE_VERTICAL=50 -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DKEEP_INT_AROUND -DHYBRID_COORD=1 -DLIMIT_ARGS -DCONFIG_BUF_LEN=65536 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0 " AR="ar" ARFLAGS="ru" )
make[3]: Entering directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/esmf_time_f90'
make[3]: Nothing to be done for `default'.
make[3]: Leaving directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/esmf_time_f90'
( cd /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_netcdf ; \
make -j 2 NETCDFPATH="/apps/netcdf/3.6.3-intel" RANLIB="ranlib" CPP="/lib/cpp -P -C" \
CC="icc" CFLAGS="-vec-threshold0 -override_limits -w -O3 -xSSE4.2 -ip -DDM_PARALLEL -DMAX_HISTORY=25 -DNMM_CORE=0" \
FC="ifort -real-size `expr 8 \* 4` -i4 -openmp -fpp -auto -O3 -vec-threshold0 -override_limits -qno-opt-dynamic-align -ip -w -ftz -align all -fno-alias -FR -convert big_endian " TRADFLAG="" AR="ar" ARFLAGS="ru" )
make[3]: Entering directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_netcdf'
make[3]: Nothing to be done for `all'.
make[3]: Leaving directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_netcdf'
( cd /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_pnetcdf ; \
make -j 2 NETCDFPATH="/apps/pnetcdf/1.6.1-intel15-impi5" RANLIB="ranlib" CPP="/lib/cpp -P -C -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_FUNC -DDM_PARALLEL -DNETCDF -DPNETCDF -DPNETCDF_QUILT -DHARDCODE_VERTICAL=50 -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DKEEP_INT_AROUND -DHYBRID_COORD=1 -DLIMIT_ARGS -DCONFIG_BUF_LEN=65536 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0" \
FC="time mpiifort -f90=ifort -real-size `expr 8 \* 4` -i4 -openmp -fpp -auto -O3 -vec-threshold0 -override_limits -qno-opt-dynamic-align -ip -w -ftz -align all -fno-alias -FR -convert big_endian " TRADFLAG="" AR="ar" ARFLAGS="ru" )
make[3]: Entering directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_pnetcdf'
make[3]: Nothing to be done for `all'.
make[3]: Leaving directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_pnetcdf'
( cd /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/ioapi_share ; \
make -i -r NATIVE_RWORDSIZE="4" RWORDSIZE="4" AR="ar" ARFLAGS="ru" )
make[3]: Entering directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/ioapi_share'
make[3]: Nothing to be done for `all'.
make[3]: Leaving directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/ioapi_share'
( cd /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_grib_share ; \
make -j 2 CC="icc" CFLAGS="-vec-threshold0 -override_limits -w -O3 -xSSE4.2 -ip -DDM_PARALLEL -DMAX_HISTORY=25 -DNMM_CORE=0" RM="rm -f" RANLIB="ranlib" CPP="/lib/cpp -P -C" \
FC="ifort -real-size `expr 8 \* 4` -i4 -I. -vec-threshold0 -override_limits -qno-opt-dynamic-align -ip -w -ftz -align all -fno-alias -FR -convert big_endian " TRADFLAG="" AR="ar" ARFLAGS="ru" archive)
make[3]: Entering directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_grib_share'
make[4]: Entering directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_grib_share'
ar ru ./libio_grib_share.a io_grib_share.o get_region_center.o gridnav.o open_file.o
ranlib ./libio_grib_share.a
make[4]: Leaving directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_grib_share'
make[3]: Leaving directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_grib_share'
( cd /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_grib1 ; \
make -j 2 CC="icc" CFLAGS="-vec-threshold0 -override_limits -w -O3 -xSSE4.2 -ip -DDM_PARALLEL -DMAX_HISTORY=25 -DNMM_CORE=0" RM="rm -f" RANLIB="ranlib" CPP="/lib/cpp -P -C" \
FC="ifort -real-size `expr 8 \* 4` -i4 -I. -vec-threshold0 -override_limits -qno-opt-dynamic-align -ip -w -ftz -align all -fno-alias -FR -convert big_endian " TRADFLAG="" AR="ar" ARFLAGS="ru" archive)
make[3]: Entering directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_grib1'
Doing make archive on library subdirectory MEL_grib1
make[4]: Entering directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_grib1/MEL_grib1'
make[5]: Entering directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_grib1/MEL_grib1'
ar ru ../libio_grib1.a FTP_getfile.o apply_bitmap.o display_gribhdr.o gbyte.o grib_dec.o grib_enc.o grib_seek.o gribgetbds.o gribgetbms.o gribgetgds.o gribgetpds.o gribhdr2file.o gribputbds.o gribputgds.o gribputpds.o hdr_print.o init_dec_struct.o init_enc_struct.o init_gribhdr.o init_struct.o ld_dec_lookup.o ld_enc_input.o ld_enc_lookup.o ld_grib_origctrs.o make_default_grbfn.o make_grib_log.o map_lvl.o map_parm.o pack_spatial.o prt_inp_struct.o upd_child_errmsg.o prt_badmsg.o swap.o grib_uthin.o set_bytes.o
ranlib ../libio_grib1.a
make[5]: Leaving directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_grib1/MEL_grib1'
make[4]: Leaving directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_grib1/MEL_grib1'
Doing make archive on library subdirectory grib1_util
make[4]: Entering directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_grib1/grib1_util'
make[5]: Entering directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_grib1/grib1_util'
ar ru ../libio_grib1.a alloc_2d.o read_grib.o write_grib.o
ranlib ../libio_grib1.a
make[5]: Leaving directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_grib1/grib1_util'
make[4]: Leaving directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_grib1/grib1_util'
Doing make archive on library subdirectory WGRIB
make[4]: Entering directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_grib1/WGRIB'
make[4]: Nothing to be done for `archive'.
make[4]: Leaving directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_grib1/WGRIB'
make[4]: Entering directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_grib1'
ar ru ./libio_grib1.a grib1_routines.o gribmap.o io_grib1.o trim.o
ranlib ./libio_grib1.a
make[4]: Leaving directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_grib1'
make[3]: Leaving directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_grib1'
( cd /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_int ; \
make -j 2 CC="mpiicc -cc=icc -DMPI2_SUPPORT -DMPI2_THREAD_SUPPORT -DFSEEKO64_OK " CFLAGS_LOCAL="-vec-threshold0 -override_limits -w -O3 -xSSE4.2 -ip " RM="rm -f" RANLIB="ranlib" CPP="/lib/cpp -P -C" \
FC="time mpiifort -f90=ifort -real-size `expr 8 \* 4` -i4 -vec-threshold0 -override_limits -qno-opt-dynamic-align -ip -w -ftz -align all -fno-alias -FR -convert big_endian -openmp -fpp -auto" FGREP="fgrep -iq" \
TRADFLAG="" AR="ar" ARFLAGS="ru" ARCHFLAGS="-DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_FUNC -DDM_PARALLEL -DNETCDF -DPNETCDF -DPNETCDF_QUILT -DHARDCODE_VERTICAL=50 -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DKEEP_INT_AROUND -DHYBRID_COORD=1 -DLIMIT_ARGS -DCONFIG_BUF_LEN=65536 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0" all )
make[3]: Entering directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_int'
make[3]: Nothing to be done for `all'.
make[3]: Leaving directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_int'
( cd /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/fftpack/fftpack5 ; \
make -j 2 FC="ifort" FFLAGS="-real-size `expr 8 \* 4` -i4 -vec-threshold0 -override_limits -qno-opt-dynamic-align -ip -w -ftz -align all -fno-alias -FR -convert big_endian " RANLIB="ranlib" AR="ar" \
ARFLAGS="ru" CPP="/lib/cpp -P -C" CPPFLAGS="-DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_FUNC -DDM_PARALLEL -DNETCDF -DPNETCDF -DPNETCDF_QUILT -DHARDCODE_VERTICAL=50 -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DKEEP_INT_AROUND -DHYBRID_COORD=1 -DLIMIT_ARGS -DCONFIG_BUF_LEN=65536 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0 -DWRF_DFI_RADAR=1 -I. " RM="rm -f" )
make[3]: Entering directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/fftpack/fftpack5'
ar ru libfftpack.a c1f2kb.o cfft1b.o cmf3kf.o cosqb1.o costmi.o dcosq1f.o dfftb1.o mradb2.o mrfti1.o r1fgkf.o rfft2i.o sinqmi.o z1f2kf.o zfft1f.o zmf4kb.o c1f2kf.o cfft1f.o cmf4kb.o cosqf1.o d1f2kb.o dcosq1i.o dfftf1.o mradb3.o msntb1.o r4_factor.o rfftb1.o sint1b.o z1f3kb.o zfft1i.o zmf4kf.o c1f3kb.o cfft1i.o cmf4kf.o cosqmb.o d1f2kf.o dcosqb1.o dffti1.o mradb4.o msntf1.o r4_mcfti1.o rfftf1.o sint1f.o z1f3kf.o zfft2b.o zmf5kb.o c1f3kf.o cfft2b.o cmf5kb.o cosqmf.o d1f3kb.o dcosqf1.o dsint1b.o mradb5.o r1f2kb.o r4_tables.o rffti1.o sint1i.o z1f4kb.o zfft2f.o zmf5kf.o c1f4kb.o cfft2f.o cmf5kf.o cosqmi.o d1f3kf.o dcost1b.o dsint1f.o mradbg.o r1f2kf.o r8_factor.o rfftmb.o sintb1.o z1f4kf.o zfft2i.o zmfgkb.o c1f4kf.o cfft2i.o cmfgkb.o cost1b.o d1f4kb.o dcost1f.o dsint1i.o mradf2.o r1f3kb.o r8_mcfti1.o rfftmf.o sintf1.o z1f5kb.o zfftmb.o zmfgkf.o c1f5kb.o cfftmb.o cmfgkf.o cost1f.o d1f4kf.o dcost1i.o dsintb1.o mradf3.o r1f3kf.o r8_tables.o rfftmi.o sintmb.o z1f5kf.o zfftmf.o zmfm1b.o c1f5kf.o cfftmf.o cmfm1b.o cost1i.o d1f5kb.o dcostb1.o dsintf1.o mradf4.o r1f4kb.o rfft1b.o sinq1b.o sintmf.o z1fgkb.o zfftmi.o zmfm1f.o c1fgkb.o cfftmi.o cmfm1f.o costb1.o d1f5kf.o dcostf1.o mcsqb1.o mradf5.o r1f4kf.o rfft1f.o sinq1f.o sintmi.o z1fgkf.o zmf2kb.o c1fgkf.o cmf2kb.o cosq1b.o costf1.o d1fgkb.o dfft1b.o mcsqf1.o mradfg.o r1f5kb.o rfft1i.o sinq1i.o xercon.o z1fm1b.o zmf2kf.o c1fm1b.o cmf2kf.o cosq1f.o costmb.o d1fgkf.o dfft1f.o mcstb1.o mrftb1.o r1f5kf.o rfft2b.o sinqmb.o xerfft.o z1fm1f.o zmf3kb.o c1fm1f.o cmf3kb.o cosq1i.o costmf.o dcosq1b.o dfft1i.o mcstf1.o mrftf1.o r1fgkb.o rfft2f.o sinqmf.o z1f2kb.o zfft1b.o zmf3kf.o
ranlib libfftpack.a
make[3]: Leaving directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/fftpack/fftpack5'
( if [ ! -e /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/tools/gen_comms.c ] ; then \
/bin/cp /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/tools/gen_comms_warning /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/tools/gen_comms.c ; \
cat /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/RSL_LITE/gen_comms.c >> /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/tools/gen_comms.c ; fi )
( if [ ! -e module_dm.F ] ; then /bin/cp module_dm_warning module_dm.F ; \
cat /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/RSL_LITE/module_dm.F >> module_dm.F ; fi )
make[2]: Leaving directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/frame'
make[1]: Leaving directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord'
make -i -r MODULE_DIRS="-I../dyn_em -I../dyn_nmm -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/esmf_time_f90 -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/main -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_netcdf -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_int -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/frame -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/share -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/phys -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/chem -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/inc -I/apps/netcdf/3.6.3-intel/include " toolsdir
make[1]: Entering directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord'
--------------------------------------
( cd tools ; make -i -r CC_TOOLS_CFLAGS="-DNMM_CORE=0" CC_TOOLS="icc -DIWORDSIZE=4 -DMAX_HISTORY=25" )
make[2]: Entering directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/tools'
make[2]: `registry' is up to date.
make[2]: Leaving directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/tools'
make[1]: Leaving directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord'
/bin/rm -f main/libwrflib.a main/libwrflib.lib
make -i -r MODULE_DIRS="-I../dyn_em -I../dyn_nmm -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/esmf_time_f90 -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/main -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_netcdf -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_int -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/frame -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/share -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/phys -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/chem -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/inc -I/apps/netcdf/3.6.3-intel/include " framework
make[1]: Entering directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord'
--------------------------------------
( cd frame ; make -i -r -j 2 framework; \
cd ../external/io_netcdf ; \
make -i -r NETCDFPATH="/apps/netcdf/3.6.3-intel" FC="time mpiifort -f90=ifort -vec-threshold0 -override_limits -qno-opt-dynamic-align -ip -w -ftz -align all -fno-alias -FR -convert big_endian " RANLIB="ranlib" \
CPP="/lib/cpp -P -C" LDFLAGS="-openmp -fpp -auto -O3 -vec-threshold0 -override_limits -qno-opt-dynamic-align -ip -w -ftz -align all -fno-alias -FR -convert big_endian -vec-threshold0 -override_limits -ip " TRADFLAG="" ESMF_IO_LIB_EXT="-L/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/esmf_time_f90 -lesmf_time" \
LIB_LOCAL="" \
ESMF_MOD_DEPENDENCE="/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/esmf_time_f90/module_utility.o" AR="INTERNAL_BUILD_ERROR_SHOULD_NOT_NEED_AR" diffwrf; \
cd ../io_netcdf ; \
make -i -r NETCDFPATH="/apps/netcdf/3.6.3-intel" FC="ifort -vec-threshold0 -override_limits -qno-opt-dynamic-align -ip -w -ftz -align all -fno-alias -FR -convert big_endian " RANLIB="ranlib" \
CPP="/lib/cpp -P -C" LDFLAGS="-openmp -fpp -auto -O3 -vec-threshold0 -override_limits -qno-opt-dynamic-align -ip -w -ftz -align all -fno-alias -FR -convert big_endian -vec-threshold0 -override_limits -ip " TRADFLAG="" ESMF_IO_LIB_EXT="-L/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/esmf_time_f90 -lesmf_time" \
LIB_LOCAL="" \
ESMF_MOD_DEPENDENCE="/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/esmf_time_f90/module_utility.o" AR="INTERNAL_BUILD_ERROR_SHOULD_NOT_NEED_AR"; \
cd ../io_pio ; \
echo SKIPPING PIO BUILD make -i -r NETCDFPATH="/apps/pnetcdf/1.6.1-intel15-impi5" FC="ifort -vec-threshold0 -override_limits -qno-opt-dynamic-align -ip -w -ftz -align all -fno-alias -FR -convert big_endian " RANLIB="ranlib" \
CPP="/lib/cpp -P -C" LDFLAGS="-openmp -fpp -auto -O3 -vec-threshold0 -override_limits -qno-opt-dynamic-align -ip -w -ftz -align all -fno-alias -FR -convert big_endian -vec-threshold0 -override_limits -ip " TRADFLAG="" ESMF_IO_LIB_EXT="-L/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/esmf_time_f90 -lesmf_time" \
LIB_LOCAL="" \
ESMF_MOD_DEPENDENCE="/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/esmf_time_f90/module_utility.o" AR="INTERNAL_BUILD_ERROR_SHOULD_NOT_NEED_AR"; \
cd ../io_int ; \
make -i -r SFC="ifort -vec-threshold0 -override_limits -qno-opt-dynamic-align -ip -w -ftz -align all -fno-alias -FR -convert big_endian " FC="ifort -vec-threshold0 -override_limits -qno-opt-dynamic-align -ip -w -ftz -align all -fno-alias -FR -convert big_endian " RANLIB="ranlib" CPP="/lib/cpp -P -C -DNONSTANDARD_SYSTEM_FUNC " DM_FC="mpiifort -f90=ifort -vec-threshold0 -override_limits -qno-opt-dynamic-align -ip -w -ftz -align all -fno-alias -FR -convert big_endian "\
TRADFLAG="" ESMF_IO_LIB_EXT="-L/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/esmf_time_f90 -lesmf_time" \
ESMF_MOD_DEPENDENCE="/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/esmf_time_f90/module_utility.o" AR="INTERNAL_BUILD_ERROR_SHOULD_NOT_NEED_AR" diffwrf ; \
cd ../../frame )
make[2]: Entering directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/frame'
ar ru ../main/libwrflib.a module_driver_constants.o module_domain_type.o module_streams.o module_domain.o module_integrate.o module_timing.o module_configure.o module_tiles.o module_machine.o module_nesting.o module_wrf_error.o module_state_description.o module_sm.o module_io.o module_comm_dm.o module_comm_dm_0.o module_comm_dm_1.o module_comm_dm_2.o module_comm_dm_3.o module_comm_dm_4.o module_comm_nesting_dm.o module_dm.o module_quilt_outbuf_ops.o module_io_quilt.o module_intermediate_nmm.o module_cpl.o module_cpl_oasis3.o module_clear_halos.o wrf_num_bytes_between.o wrf_shutdown.o wrf_debug.o libmassv.o collect_on_comm.o hires_timer.o clog.o nl_get_0_routines.o nl_get_1_routines.o nl_get_2_routines.o nl_get_3_routines.o nl_get_4_routines.o nl_get_5_routines.o nl_get_6_routines.o nl_get_7_routines.o nl_set_0_routines.o nl_set_1_routines.o nl_set_2_routines.o nl_set_3_routines.o nl_set_4_routines.o nl_set_5_routines.o nl_set_6_routines.o nl_set_7_routines.o module_alloc_space_0.o module_alloc_space_1.o module_alloc_space_2.o module_alloc_space_3.o module_alloc_space_4.o module_alloc_space_5.o module_alloc_space_6.o module_alloc_space_7.o module_alloc_space_8.o module_alloc_space_9.o
ar: creating ../main/libwrflib.a
ranlib ../main/libwrflib.a
make[2]: Leaving directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/frame'
make[2]: Entering directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_netcdf'
make[2]: `diffwrf' is up to date.
make[2]: Leaving directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_netcdf'
make[2]: Entering directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_netcdf'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_netcdf'
SKIPPING PIO BUILD make -i -r NETCDFPATH=/apps/pnetcdf/1.6.1-intel15-impi5 FC=ifort -vec-threshold0 -override_limits -qno-opt-dynamic-align -ip -w -ftz -align all -fno-alias -FR -convert big_endian RANLIB=ranlib CPP=/lib/cpp -P -C LDFLAGS=-openmp -fpp -auto -O3 -vec-threshold0 -override_limits -qno-opt-dynamic-align -ip -w -ftz -align all -fno-alias -FR -convert big_endian -vec-threshold0 -override_limits -ip TRADFLAG= ESMF_IO_LIB_EXT=-L/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/esmf_time_f90 -lesmf_time LIB_LOCAL= ESMF_MOD_DEPENDENCE=/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/esmf_time_f90/module_utility.o AR=INTERNAL_BUILD_ERROR_SHOULD_NOT_NEED_AR
make[2]: Entering directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_int'
make[2]: `diffwrf' is up to date.
make[2]: Leaving directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_int'
make[1]: Leaving directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord'
make -i -r MODULE_DIRS="-I../dyn_em -I../dyn_nmm -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/esmf_time_f90 -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/main -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_netcdf -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_int -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/frame -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/share -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/phys -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/chem -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/inc -I/apps/netcdf/3.6.3-intel/include " shared
make[1]: Entering directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord'
--------------------------------------
if [ "`echo -j 2 | sed -e 's/-j//g' -e 's/ \+//g'`" -gt "6" ] ; then \
( cd share ; make -i -r -j 6 ) ; \
else \
( cd share ; make -i -r -j 2 ) ; \
fi
make[2]: Entering directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/share'
if [ 0 -eq 1 ] ; then \
make -i -r nmm_contrib ; \
ar ru ../main/libwrflib.a module_model_constants.o module_bc_time_utilities.o module_get_file_names.o module_compute_geop.o module_check_a_mundo.o module_random.o module_llxy.o module_interp_nmm.o module_interp_store.o module_MPP.o module_date_time.o module_bc.o module_io_wrf.o module_soil_pre.o module_io_domain.o module_optional_input.o solve_interface.o mediation_interp_domain.o mediation_force_domain.o mediation_feedback_domain.o start_domain.o init_modules.o set_timekeeping.o interp_fcn.o sint.o wrf_ext_write_field.o wrf_ext_read_field.o wrf_tsin.o landread.o track_driver.o track_input.o bobrand.o wrf_timeseries.o track_driver.o wrf_fddaobs_in.o mediation_nest_move.o setfeenv.o input_wrf.o output_wrf.o wrf_bdyout.o wrf_bdyin.o dfi.o mediation_integrate.o mediation_wrfmain.o ; \
else \
ar ru ../main/libwrflib.a module_model_constants.o module_bc_time_utilities.o module_get_file_names.o module_compute_geop.o module_check_a_mundo.o module_random.o module_llxy.o module_interp_nmm.o module_interp_store.o module_MPP.o module_date_time.o module_bc.o module_io_wrf.o module_soil_pre.o module_io_domain.o module_optional_input.o solve_interface.o mediation_interp_domain.o mediation_force_domain.o mediation_feedback_domain.o start_domain.o init_modules.o set_timekeeping.o interp_fcn.o sint.o wrf_ext_write_field.o wrf_ext_read_field.o wrf_tsin.o landread.o track_driver.o track_input.o bobrand.o wrf_timeseries.o track_driver.o wrf_fddaobs_in.o mediation_nest_move.o setfeenv.o input_wrf.o output_wrf.o wrf_bdyout.o wrf_bdyin.o dfi.o mediation_integrate.o mediation_wrfmain.o ; \
fi
make[2]: Leaving directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/share'
make[1]: Leaving directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord'
make -i -r MODULE_DIRS="-I../dyn_em -I../dyn_nmm -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/esmf_time_f90 -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/main -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_netcdf -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_int -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/frame -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/share -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/phys -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/chem -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/inc -I/apps/netcdf/3.6.3-intel/include " physics
make[1]: Entering directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord'
--------------------------------------
if [ 0 -eq 0 ] ; then \
( cd phys ; make -i -r CF2=" " ) ; \
else \
( cd phys ; make -i -r CF2="../chem/module_data_mosaic_asect.o" ) ; \
fi
make[2]: Entering directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/phys'
if [ 0 -eq 1 ] ; then \
make -i -r -j 2 nmm_contrib ; \
ar ru ../main/libwrflib.a module_cam_shr_kind_mod.o module_cam_support.o module_cam_shr_const_mod.o module_cam_physconst.o module_cam_cldwat.o module_cam_wv_saturation.o module_cam_esinti.o module_cam_gffgch.o module_cam_error_function.o module_cam_constituents.o module_cam_trb_mtn_stress.o module_cam_molec_diff.o module_cam_upper_bc.o module_cam_bl_diffusion_solver.o module_cam_bl_eddy_diff.o module_cam_mp_microp_aero.o module_cam_mp_cldwat2m_micro.o module_cam_mp_ndrop.o module_cam_mp_modal_aero_initialize_data_phys.o module_cam_mp_radconstants.o module_cam_mp_conv_water.o module_cam_mp_qneg3.o module_data_cam_mam_aero.o module_data_cam_mam_asect.o module_cam_infnan.o module_bl_ysu.o module_bl_shinhong.o module_bl_mrf.o module_bl_gfs.o module_bl_gfs2011.o module_bl_myjpbl.o module_bl_qnsepbl.o module_bl_acm.o module_bl_mynn.o module_bl_mynn_v36.o module_bl_mynn_v34.o module_bl_fogdes.o module_bl_gwdo.o module_bl_myjurb.o module_bl_boulac.o module_bl_camuwpbl_driver.o module_bl_mfshconvpbl.o module_shcu_camuwshcu_driver.o module_shcu_camuwshcu.o module_shcu_grims.o module_cu_camzm_driver.o module_cu_camzm.o module_bl_temf.o module_bl_gbmpbl.o module_cu_g3.o module_cu_kf.o module_cu_bmj.o module_cu_kfeta.o module_cu_mskf.o module_cu_tiedtke.o module_cu_ntiedtke.o module_cu_gd.o module_cu_gf_deep.o module_cu_gf_sh.o module_cugf_wrfdrv.o module_cu_nsas.o module_cu_sas.o module_cu_mesosas.o module_cu_osas.o module_cu_kfcup.o module_mp_radar.o module_mp_kessler.o module_mp_lin.o module_mp_sbu_ylin.o module_mp_wsm3.o module_mp_wsm5.o module_mp_wsm6.o module_mp_etanew.o module_mp_fer_hires.o module_mp_HWRF.o module_mp_thompson.o module_mp_full_sbm.o module_mp_fast_sbm.o module_ltng_lpi.o module_mp_gsfcgce.o module_mp_morr_two_moment.o module_mp_milbrandt2mom.o module_mp_nssl_2mom.o module_mp_wdm5.o module_mp_wdm6.o module_mp_cammgmp_driver.o module_ra_sw.o module_ra_clWRF_support.o module_ra_gsfcsw.o module_ra_goddard.o module_ra_rrtm.o module_ra_rrtmg_lw.o module_ra_rrtmg_sw.o module_ra_rrtmg_lwf.o module_ra_rrtmg_swf.o module_ra_cam_support.o module_ra_cam.o module_ra_gfdleta.o module_ra_flg.o module_ra_HWRF.o module_ra_hs.o module_ra_eclipse.o module_ra_aerosol.o module_sf_sfclay.o module_sf_sfclayrev.o module_sf_gfs.o module_sf_exchcoef.o module_sf_gfdl.o module_sf_slab.o module_sf_noahdrv.o module_sf_noahlsm.o module_sf_clm.o module_sf_ssib.o module_sf_noah_seaice.o module_sf_noah_seaice_drv.o module_sf_noahlsm_glacial_only.o module_sf_noahmp_groundwater.o module_sf_noahmpdrv.o module_sf_noahmplsm.o module_sf_noahmp_glacier.o module_sf_urban.o module_sf_bep.o module_sf_bep_bem.o module_sf_bem.o module_sf_pxlsm.o module_sf_pxlsm_data.o module_sf_ruclsm.o module_sf_sfcdiags.o module_sf_sfcdiags_ruclsm.o module_sf_sstskin.o module_sf_tmnupdate.o module_sf_ocean_driver.o module_sf_oml.o module_sf_3dpwp.o module_sf_myjsfc.o module_sf_qnsesfc.o module_sf_mynn.o module_sf_mynn_v36.o module_sf_mynn_v34.o module_sf_fogdes.o module_sf_pxsfclay.o module_sf_temfsfclay.o module_sf_idealscmsfclay.o module_sf_scmflux.o module_sf_scmskintemp.o module_physics_addtendc.o module_physics_init.o module_gfs_machine.o module_gfs_funcphys.o module_gfs_physcons.o module_progtm.o module_pbl_driver.o module_data_gocart_dust.o module_cumulus_driver.o module_shallowcu_driver.o module_microphysics_driver.o module_microphysics_zero_out.o module_mixactivate.o module_radiation_driver.o module_surface_driver.o module_lightning_driver.o module_ltng_cpmpr92z.o module_ltng_crmpr92.o module_ltng_iccg.o module_fdda_psufddagd.o module_fdda_spnudging.o module_fddagd_driver.o module_fddaobs_rtfdda.o module_fddaobs_driver.o module_wind_fitch.o module_sf_lake.o module_diagnostics_driver.o \
\
module_diag_refl.o ; \
else \
make -i -r -j 2 non_nmm ; \
ar ru ../main/libwrflib.a module_cam_shr_kind_mod.o module_cam_support.o module_cam_shr_const_mod.o module_cam_physconst.o module_cam_cldwat.o module_cam_wv_saturation.o module_cam_esinti.o module_cam_gffgch.o module_cam_error_function.o module_cam_constituents.o module_cam_trb_mtn_stress.o module_cam_molec_diff.o module_cam_upper_bc.o module_cam_bl_diffusion_solver.o module_cam_bl_eddy_diff.o module_cam_mp_microp_aero.o module_cam_mp_cldwat2m_micro.o module_cam_mp_ndrop.o module_cam_mp_modal_aero_initialize_data_phys.o module_cam_mp_radconstants.o module_cam_mp_conv_water.o module_cam_mp_qneg3.o module_data_cam_mam_aero.o module_data_cam_mam_asect.o module_cam_infnan.o module_bl_ysu.o module_bl_shinhong.o module_bl_mrf.o module_bl_gfs.o module_bl_gfs2011.o module_bl_myjpbl.o module_bl_qnsepbl.o module_bl_acm.o module_bl_mynn.o module_bl_mynn_v36.o module_bl_mynn_v34.o module_bl_fogdes.o module_bl_gwdo.o module_bl_myjurb.o module_bl_boulac.o module_bl_camuwpbl_driver.o module_bl_mfshconvpbl.o module_shcu_camuwshcu_driver.o module_shcu_camuwshcu.o module_shcu_grims.o module_cu_camzm_driver.o module_cu_camzm.o module_bl_temf.o module_bl_gbmpbl.o module_cu_g3.o module_cu_kf.o module_cu_bmj.o module_cu_kfeta.o module_cu_mskf.o module_cu_tiedtke.o module_cu_ntiedtke.o module_cu_gd.o module_cu_gf_deep.o module_cu_gf_sh.o module_cugf_wrfdrv.o module_cu_nsas.o module_cu_sas.o module_cu_mesosas.o module_cu_osas.o module_cu_kfcup.o module_mp_radar.o module_mp_kessler.o module_mp_lin.o module_mp_sbu_ylin.o module_mp_wsm3.o module_mp_wsm5.o module_mp_wsm6.o module_mp_etanew.o module_mp_fer_hires.o module_mp_HWRF.o module_mp_thompson.o module_mp_full_sbm.o module_mp_fast_sbm.o module_ltng_lpi.o module_mp_gsfcgce.o module_mp_morr_two_moment.o module_mp_milbrandt2mom.o module_mp_nssl_2mom.o module_mp_wdm5.o module_mp_wdm6.o module_mp_cammgmp_driver.o module_ra_sw.o module_ra_clWRF_support.o module_ra_gsfcsw.o module_ra_goddard.o module_ra_rrtm.o module_ra_rrtmg_lw.o module_ra_rrtmg_sw.o module_ra_rrtmg_lwf.o module_ra_rrtmg_swf.o module_ra_cam_support.o module_ra_cam.o module_ra_gfdleta.o module_ra_flg.o module_ra_HWRF.o module_ra_hs.o module_ra_eclipse.o module_ra_aerosol.o module_sf_sfclay.o module_sf_sfclayrev.o module_sf_gfs.o module_sf_exchcoef.o module_sf_gfdl.o module_sf_slab.o module_sf_noahdrv.o module_sf_noahlsm.o module_sf_clm.o module_sf_ssib.o module_sf_noah_seaice.o module_sf_noah_seaice_drv.o module_sf_noahlsm_glacial_only.o module_sf_noahmp_groundwater.o module_sf_noahmpdrv.o module_sf_noahmplsm.o module_sf_noahmp_glacier.o module_sf_urban.o module_sf_bep.o module_sf_bep_bem.o module_sf_bem.o module_sf_pxlsm.o module_sf_pxlsm_data.o module_sf_ruclsm.o module_sf_sfcdiags.o module_sf_sfcdiags_ruclsm.o module_sf_sstskin.o module_sf_tmnupdate.o module_sf_ocean_driver.o module_sf_oml.o module_sf_3dpwp.o module_sf_myjsfc.o module_sf_qnsesfc.o module_sf_mynn.o module_sf_mynn_v36.o module_sf_mynn_v34.o module_sf_fogdes.o module_sf_pxsfclay.o module_sf_temfsfclay.o module_sf_idealscmsfclay.o module_sf_scmflux.o module_sf_scmskintemp.o module_physics_addtendc.o module_physics_init.o module_gfs_machine.o module_gfs_funcphys.o module_gfs_physcons.o module_progtm.o module_pbl_driver.o module_data_gocart_dust.o module_cumulus_driver.o module_shallowcu_driver.o module_microphysics_driver.o module_microphysics_zero_out.o module_mixactivate.o module_radiation_driver.o module_surface_driver.o module_lightning_driver.o module_ltng_cpmpr92z.o module_ltng_crmpr92.o module_ltng_iccg.o module_fdda_psufddagd.o module_fdda_spnudging.o module_fddagd_driver.o module_fddaobs_rtfdda.o module_fddaobs_driver.o module_wind_fitch.o module_sf_lake.o module_diagnostics_driver.o \
module_fr_fire_driver.o module_fr_fire_driver_wrf.o module_fr_fire_atm.o module_fr_fire_model.o module_fr_fire_core.o module_fr_fire_phys.o module_fr_fire_util.o \
module_diag_afwa.o module_diag_afwa_hail.o module_diag_cl.o module_diag_misc.o module_diag_pld.o module_diag_zld.o ; \
fi
make[3]: Entering directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/phys'
make[3]: Nothing to be done for `non_nmm'.
make[3]: Leaving directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/phys'
make[2]: Leaving directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/phys'
make[1]: Leaving directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord'
if [ 0 -eq 1 ] ; then make -i -r MODULE_DIRS="-I../dyn_em -I../dyn_nmm -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/esmf_time_f90 -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/main -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_netcdf -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_int -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/frame -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/share -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/phys -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/chem -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/inc -I/apps/netcdf/3.6.3-intel/include " chemics ; fi
if [ 1 -eq 1 ] ; then make -i -r MODULE_DIRS="-I../dyn_em -I../dyn_nmm -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/esmf_time_f90 -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/main -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_netcdf -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_int -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/frame -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/share -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/phys -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/chem -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/inc -I/apps/netcdf/3.6.3-intel/include " em_core ; fi
make[1]: Entering directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord'
--------------------------------------
if [ 0 -eq 0 ] ; then \
CF= ; \
else \
CF="../chem/module_aerosols_sorgam.o ../chem/module_gocart_aerosols.o ../chem/module_mosaic_driver.o ../chem/module_input_tracer.o ../chem/module_aerosols_soa_vbs.o" ; \
fi
( cd dyn_em ; make -i -r -j 2 CF="" )
make[2]: Entering directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/dyn_em'
rm -f solve_em.o
sed -e "s/grid%mu/gridmu/g" -e "s/grid%Mu/gridMu/g" -e "s/^\!.*'.*//" -e "s/^ *\!.*'.*//" solve_em.F > solve_em.G
/lib/cpp -P -C -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_FUNC -DDM_PARALLEL -DNETCDF -DPNETCDF -DPNETCDF_QUILT -DHARDCODE_VERTICAL=50 -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DKEEP_INT_AROUND -DHYBRID_COORD=1 -DLIMIT_ARGS -DCONFIG_BUF_LEN=65536 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0 -DWRF_DFI_RADAR=1 -I. -D_OPENMP solve_em.G > solve_em.H
solve_em.G:3799:81: warning: missing terminating " character
solve_em.G:3800:81: warning: missing terminating " character
solve_em.G:3801:81: warning: missing terminating " character
solve_em.G:3802:81: warning: missing terminating " character
sed -e "s/gridmu/grid%mu/g" -e "s/gridMu/grid%Mu/g" solve_em.H > solve_em.bb
/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/tools/standard.exe solve_em.bb | /lib/cpp -P -C > solve_em.f90
rm -f solve_em.G solve_em.H solve_em.bb
time mpiifort -f90=ifort -o solve_em.o -c -O3 -vec-threshold0 -override_limits -qno-opt-dynamic-align -ip -w -ftz -align all -fno-alias -FR -convert big_endian -openmp -fpp -auto -I../dyn_em -I../dyn_nmm -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/esmf_time_f90 -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/main -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_netcdf -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_int -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/frame -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/share -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/phys -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/chem -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/inc -I/apps/netcdf/3.6.3-intel/include -real-size `expr 8 \* 4` -i4 solve_em.f90
solve_em.f90(324): error #6355: This binary operation is invalid for this data type. [CURTIME]
IF ( (curtime .EQ. intervalchange) .AND. &
---------^
solve_em.f90(324): error #6355: This binary operation is invalid for this data type. [INTERVALCHANGE]
IF ( (curtime .EQ. intervalchange) .AND. &
----------------------^
compilation aborted for solve_em.f90 (code 1)
real 0m9.824s
user 0m5.004s
sys 0m1.317s
make[2]: [solve_em.o] Error 1 (ignored)
ar ru ../main/libwrflib.a module_advect_em.o module_diffusion_em.o module_small_step_em.o module_big_step_utilities_em.o module_em.o module_solvedebug_em.o module_bc_em.o module_init_utilities.o module_wps_io_arw.o module_damping_em.o module_polarfft.o module_force_scm.o module_first_rk_step_part1.o module_first_rk_step_part2.o module_avgflx_em.o module_sfs_nba.o module_convtrans_prep.o module_sfs_driver.o module_stoch.o module_after_all_rk_steps.o init_modules_em.o solve_em.o start_em.o shift_domain_em.o couple_or_uncouple_em.o nest_init_utils.o adapt_timestep_em.o interp_domain_em.o
ar: solve_em.o: No such file or directory
make[2]: [dyn_em] Error 1 (ignored)
make[2]: Leaving directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/dyn_em'
make[1]: Leaving directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord'
if [ 0 -eq 1 ] ; then make -i -r MODULE_DIRS="-I../dyn_em -I../dyn_nmm -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/esmf_time_f90 -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/main -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_netcdf -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_int -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/frame -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/share -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/phys -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/chem -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/inc -I/apps/netcdf/3.6.3-intel/include " nmm_core ; fi
if [ 0 -eq 1 ] ; then make -i -r MODULE_DIRS="-I../dyn_em -I../dyn_nmm -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/esmf_time_f90 -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/main -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_netcdf -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_int -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/frame -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/share -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/phys -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/chem -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/inc -I/apps/netcdf/3.6.3-intel/include " exp_core ; fi
if [ 0 -eq 1 ] ; then make -i -r MODULE_DIRS="-I../dyn_em -I../dyn_nmm -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/esmf_time_f90 -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/main -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_netcdf -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_int -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/frame -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/share -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/phys -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/chem -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/inc -I/apps/netcdf/3.6.3-intel/include " wrf_hydro ; fi
( cd main ; make -i -r MODULE_DIRS="-I../dyn_em -I../dyn_nmm -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/esmf_time_f90 -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/main -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_netcdf -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_int -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/frame -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/share -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/phys -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/chem -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/inc -I/apps/netcdf/3.6.3-intel/include " SOLVER=em em_wrf )
make[1]: Entering directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/main'
ranlib libwrflib.a
time mpiifort -f90=ifort -o wrf.exe -openmp -fpp -auto -O3 -vec-threshold0 -override_limits -qno-opt-dynamic-align -ip -w -ftz -align all -fno-alias -FR -convert big_endian -vec-threshold0 -override_limits -ip wrf.o ../main/module_wrf_top.o libwrflib.a /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/fftpack/fftpack5/libfftpack.a /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_grib1/libio_grib1.a /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_grib_share/libio_grib_share.a /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_int/libwrfio_int.a -L/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/esmf_time_f90 -lesmf_time /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/RSL_LITE/librsl_lite.a /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/frame/module_internal_header_util.o /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/frame/pack_utils.o -L/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_netcdf -lwrfio_nf -L/apps/netcdf/3.6.3-intel/lib -lnetcdf -L/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_pnetcdf -lwrfio_pnf -L/apps/pnetcdf/1.6.1-intel15-impi5/lib -lpnetcdf
libwrflib.a(module_integrate.o): In function `module_integrate_mp_integrate_':
module_integrate.f90:(.text+0x382): undefined reference to `real_time_'
libwrflib.a(module_dm.o): In function `feedback_domain_em_part2_':
module_dm.f90:(.text+0x1f1eac): undefined reference to `cd_feedback_mask_'
module_dm.f90:(.text+0x1f2051): undefined reference to `cd_feedback_mask_'
module_dm.f90:(.text+0x1f21f6): undefined reference to `cd_feedback_mask_'
module_dm.f90:(.text+0x1f23de): undefined reference to `cd_feedback_mask_'
module_dm.f90:(.text+0x1f2677): undefined reference to `cd_feedback_mask_'
libwrflib.a(module_dm.o):module_dm.f90:(.text+0x1f2909): more undefined references to `cd_feedback_mask_' follow
libwrflib.a(solve_interface.o): In function `solve_interface_':
solve_interface.f90:(.text+0x9a8): undefined reference to `solve_em_'
libwrflib.a(init_modules.o): In function `init_modules_':
init_modules.f90:(.text+0x2d): undefined reference to `init_modules_em_'
libwrflib.a(mediation_integrate.o): In function `med_nest_initial_':
mediation_integrate.f90:(.text+0x14a7): undefined reference to `init_domain_vert_nesting_'
mediation_integrate.f90:(.text+0x1b11): undefined reference to `copy_3d_field_'
mediation_integrate.f90:(.text+0x2569): undefined reference to `copy_3d_field_'
mediation_integrate.f90:(.text+0x2fa1): undefined reference to `copy_3d_field_'
mediation_integrate.f90:(.text+0x3a5f): undefined reference to `input_terrain_rsmas_'
mediation_integrate.f90:(.text+0x3e61): undefined reference to `copy_3d_field_'
mediation_integrate.f90:(.text+0x48b9): undefined reference to `copy_3d_field_'
mediation_integrate.f90:(.text+0x532a): undefined reference to `blend_terrain_'
mediation_integrate.f90:(.text+0x5d82): undefined reference to `blend_terrain_'
mediation_integrate.f90:(.text+0x67ba): undefined reference to `blend_terrain_'
mediation_integrate.f90:(.text+0x74dd): undefined reference to `adjust_tempqv_'
libwrflib.a(mediation_integrate.o): In function `init_domain_constants_':
mediation_integrate.f90:(.text+0xdaac): undefined reference to `init_domain_constants_em_'
libwrflib.a(mediation_force_domain.o): In function `med_force_domain_':
mediation_force_domain.f90:(.text+0x16e8): undefined reference to `couple_or_uncouple_em_'
mediation_force_domain.f90:(.text+0x24f9): undefined reference to `couple_or_uncouple_em_'
mediation_force_domain.f90:(.text+0x40c8): undefined reference to `couple_or_uncouple_em_'
mediation_force_domain.f90:(.text+0x4edb): undefined reference to `couple_or_uncouple_em_'
libwrflib.a(mediation_feedback_domain.o): In function `med_feedback_domain_':
mediation_feedback_domain.f90:(.text+0x2520): undefined reference to `update_after_feedback_em_'
libwrflib.a(start_domain.o): In function `start_domain_':
start_domain.f90:(.text+0x985): undefined reference to `start_domain_em_'
0.32user 2.42system 0:03.95elapsed 69%CPU (0avgtext+0avgdata 59744maxresident)k
16inputs+58288outputs (0major+67497minor)pagefaults 0swaps
make[1]: [em_wrf] Error 1 (ignored)
make[1]: Leaving directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/main'
( cd run ; /bin/rm -f wrf.exe ; ln -s ../main/wrf.exe . )
if [ 0 -eq 1 ] ; then \
( cd main ; make -i -r MODULE_DIRS="-I../dyn_em -I../dyn_nmm -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/esmf_time_f90 -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/main -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_netcdf -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_int -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/frame -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/share -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/phys -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/chem -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/inc -I/apps/netcdf/3.6.3-intel/include " SOLVER=em em_wrf_SST_ESMF ) ; \
fi
build started: Tue Oct 3 13:47:44 GMT 2017
build completed: Tue Oct 3 13:48:14 GMT 2017
--------------------------------------
( cd main ; make -i -r MODULE_DIRS="-I../dyn_em -I../dyn_nmm -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/esmf_time_f90 -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/main -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_netcdf -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_int -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/frame -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/share -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/phys -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/chem -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/inc -I/apps/netcdf/3.6.3-intel/include " SOLVER=em IDEAL_CASE=real em_real )
make[1]: Entering directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/main'
ranlib libwrflib.a
time mpiifort -f90=ifort -o ndown.exe -openmp -fpp -auto -O3 -vec-threshold0 -override_limits -qno-opt-dynamic-align -ip -w -ftz -align all -fno-alias -FR -convert big_endian -vec-threshold0 -override_limits -ip ndown_em.o ../dyn_em/module_initialize_real.o libwrflib.a /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/fftpack/fftpack5/libfftpack.a /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_grib1/libio_grib1.a /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_grib_share/libio_grib_share.a /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_int/libwrfio_int.a -L/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/esmf_time_f90 -lesmf_time /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/RSL_LITE/librsl_lite.a /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/frame/module_internal_header_util.o /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/frame/pack_utils.o -L/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_netcdf -lwrfio_nf -L/apps/netcdf/3.6.3-intel/lib -lnetcdf -L/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_pnetcdf -lwrfio_pnf -L/apps/pnetcdf/1.6.1-intel15-impi5/lib -lpnetcdf
ndown_em.o: In function `MAIN__':
ndown_em.f90:(.text+0x4922): undefined reference to `module_big_step_utilities_em_mp_couple_'
ndown_em.f90:(.text+0x4c26): undefined reference to `module_big_step_utilities_em_mp_couple_'
ndown_em.f90:(.text+0x4f2a): undefined reference to `module_big_step_utilities_em_mp_couple_'
ndown_em.f90:(.text+0x522e): undefined reference to `module_big_step_utilities_em_mp_couple_'
ndown_em.f90:(.text+0x5677): undefined reference to `module_big_step_utilities_em_mp_couple_'
ndown_em.o:ndown_em.f90:(.text+0x6340): more undefined references to `module_big_step_utilities_em_mp_couple_' follow
ndown_em.o: In function `MAIN__':
ndown_em.f90:(.text+0x28e19): undefined reference to `copy_3d_field_'
ndown_em.f90:(.text+0x29e79): undefined reference to `blend_terrain_'
ndown_em.f90:(.text+0x2c254): undefined reference to `init_domain_constants_em_'
ndown_em.o: In function `init_domain_constants_em_ptr_':
ndown_em.f90:(.text+0x39e77): undefined reference to `init_domain_constants_em_'
../dyn_em/module_initialize_real.o: In function `module_initialize_real_mp_init_domain_rk_':
module_initialize_real.f90:(.text+0x5a579): undefined reference to `blend_terrain_'
module_initialize_real.f90:(.text+0x70fb2): undefined reference to `module_polarfft_mp_pxft_'
libwrflib.a(module_dm.o): In function `feedback_domain_em_part2_':
module_dm.f90:(.text+0x1f1eac): undefined reference to `cd_feedback_mask_'
module_dm.f90:(.text+0x1f2051): undefined reference to `cd_feedback_mask_'
module_dm.f90:(.text+0x1f21f6): undefined reference to `cd_feedback_mask_'
module_dm.f90:(.text+0x1f23de): undefined reference to `cd_feedback_mask_'
module_dm.f90:(.text+0x1f2677): undefined reference to `cd_feedback_mask_'
libwrflib.a(module_dm.o):module_dm.f90:(.text+0x1f2909): more undefined references to `cd_feedback_mask_' follow
libwrflib.a(init_modules.o): In function `init_modules_':
init_modules.f90:(.text+0x2d): undefined reference to `init_modules_em_'
libwrflib.a(start_domain.o): In function `start_domain_':
start_domain.f90:(.text+0x985): undefined reference to `start_domain_em_'
0.38user 1.54system 0:02.84elapsed 67%CPU (0avgtext+0avgdata 58848maxresident)k
0inputs+59224outputs (0major+67255minor)pagefaults 0swaps
make[1]: [em_real] Error 1 (ignored)
#TEMPORARILY REMOVED time mpiifort -f90=ifort -o nup.exe -openmp -fpp -auto -O3 -vec-threshold0 -override_limits -qno-opt-dynamic-align -ip -w -ftz -align all -fno-alias -FR -convert big_endian -vec-threshold0 -override_limits -ip nup_em.o ../dyn_em/module_initialize_real.o libwrflib.a /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/fftpack/fftpack5/libfftpack.a /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_grib1/libio_grib1.a /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_grib_share/libio_grib_share.a /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_int/libwrfio_int.a -L/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/esmf_time_f90 -lesmf_time /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/RSL_LITE/librsl_lite.a /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/frame/module_internal_header_util.o /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/frame/pack_utils.o -L/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_netcdf -lwrfio_nf -L/apps/netcdf/3.6.3-intel/lib -lnetcdf -L/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_pnetcdf -lwrfio_pnf -L/apps/pnetcdf/1.6.1-intel15-impi5/lib -lpnetcdf
time mpiifort -f90=ifort -o tc.exe -openmp -fpp -auto -O3 -vec-threshold0 -override_limits -qno-opt-dynamic-align -ip -w -ftz -align all -fno-alias -FR -convert big_endian -vec-threshold0 -override_limits -ip tc_em.o ../dyn_em/module_initialize_real.o libwrflib.a /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/fftpack/fftpack5/libfftpack.a /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_grib1/libio_grib1.a /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_grib_share/libio_grib_share.a /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_int/libwrfio_int.a -L/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/esmf_time_f90 -lesmf_time /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/RSL_LITE/librsl_lite.a /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/frame/module_internal_header_util.o /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/frame/pack_utils.o -L/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_netcdf -lwrfio_nf -L/apps/netcdf/3.6.3-intel/lib -lnetcdf -L/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_pnetcdf -lwrfio_pnf -L/apps/pnetcdf/1.6.1-intel15-impi5/lib -lpnetcdf
../dyn_em/module_initialize_real.o: In function `module_initialize_real_mp_init_domain_rk_':
module_initialize_real.f90:(.text+0x5a579): undefined reference to `blend_terrain_'
module_initialize_real.f90:(.text+0x70fb2): undefined reference to `module_polarfft_mp_pxft_'
libwrflib.a(module_dm.o): In function `feedback_domain_em_part2_':
module_dm.f90:(.text+0x1f1eac): undefined reference to `cd_feedback_mask_'
module_dm.f90:(.text+0x1f2051): undefined reference to `cd_feedback_mask_'
module_dm.f90:(.text+0x1f21f6): undefined reference to `cd_feedback_mask_'
module_dm.f90:(.text+0x1f23de): undefined reference to `cd_feedback_mask_'
module_dm.f90:(.text+0x1f2677): undefined reference to `cd_feedback_mask_'
libwrflib.a(module_dm.o):module_dm.f90:(.text+0x1f2909): more undefined references to `cd_feedback_mask_' follow
libwrflib.a(init_modules.o): In function `init_modules_':
init_modules.f90:(.text+0x2d): undefined reference to `init_modules_em_'
libwrflib.a(start_domain.o): In function `start_domain_':
start_domain.f90:(.text+0x985): undefined reference to `start_domain_em_'
0.34user 0.63system 0:01.37elapsed 71%CPU (0avgtext+0avgdata 58516maxresident)k
0inputs+58872outputs (0major+68170minor)pagefaults 0swaps
make[1]: [em_real] Error 1 (ignored)
time mpiifort -f90=ifort -o real.exe -openmp -fpp -auto -O3 -vec-threshold0 -override_limits -qno-opt-dynamic-align -ip -w -ftz -align all -fno-alias -FR -convert big_endian -vec-threshold0 -override_limits -ip real_em.o ../dyn_em/module_initialize_real.o libwrflib.a /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/fftpack/fftpack5/libfftpack.a /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_grib1/libio_grib1.a /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_grib_share/libio_grib_share.a /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_int/libwrfio_int.a -L/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/esmf_time_f90 -lesmf_time /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/RSL_LITE/librsl_lite.a /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/frame/module_internal_header_util.o /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/frame/pack_utils.o -L/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_netcdf -lwrfio_nf -L/apps/netcdf/3.6.3-intel/lib -lnetcdf -L/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_pnetcdf -lwrfio_pnf -L/apps/pnetcdf/1.6.1-intel15-impi5/lib -lpnetcdf
real_em.o: In function `MAIN__':
real_em.f90:(.text+0x10dc): undefined reference to `module_wps_io_arw_mp_read_wps_'
real_em.o: In function `assemble_output_':
real_em.f90:(.text+0x2425): undefined reference to `module_big_step_utilities_em_mp_couple_'
real_em.f90:(.text+0x26ce): undefined reference to `module_big_step_utilities_em_mp_couple_'
real_em.f90:(.text+0x2977): undefined reference to `module_big_step_utilities_em_mp_couple_'
real_em.f90:(.text+0x2c12): undefined reference to `module_big_step_utilities_em_mp_couple_'
real_em.f90:(.text+0x33d9): undefined reference to `module_big_step_utilities_em_mp_couple_'
real_em.o:real_em.f90:(.text+0x3b89): more undefined references to `module_big_step_utilities_em_mp_couple_' follow
real_em.o: In function `med_sidata_input_':
real_em.f90:(.text+0x74449): undefined reference to `module_wps_io_arw_mp_read_wps_'
../dyn_em/module_initialize_real.o: In function `module_initialize_real_mp_init_domain_rk_':
module_initialize_real.f90:(.text+0x5a579): undefined reference to `blend_terrain_'
module_initialize_real.f90:(.text+0x70fb2): undefined reference to `module_polarfft_mp_pxft_'
libwrflib.a(module_dm.o): In function `feedback_domain_em_part2_':
module_dm.f90:(.text+0x1f1eac): undefined reference to `cd_feedback_mask_'
module_dm.f90:(.text+0x1f2051): undefined reference to `cd_feedback_mask_'
module_dm.f90:(.text+0x1f21f6): undefined reference to `cd_feedback_mask_'
module_dm.f90:(.text+0x1f23de): undefined reference to `cd_feedback_mask_'
module_dm.f90:(.text+0x1f2677): undefined reference to `cd_feedback_mask_'
libwrflib.a(module_dm.o):module_dm.f90:(.text+0x1f2909): more undefined references to `cd_feedback_mask_' follow
libwrflib.a(init_modules.o): In function `init_modules_':
init_modules.f90:(.text+0x2d): undefined reference to `init_modules_em_'
libwrflib.a(start_domain.o): In function `start_domain_':
start_domain.f90:(.text+0x985): undefined reference to `start_domain_em_'
0.36user 1.25system 0:01.98elapsed 81%CPU (0avgtext+0avgdata 58616maxresident)k
1168inputs+59656outputs (1major+68201minor)pagefaults 0swaps
make[1]: [em_real] Error 1 (ignored)
make[1]: Leaving directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/main'
( cd test/em_real ; /bin/rm -f wrf.exe ; ln -s ../../main/wrf.exe . )
if [ 0 -eq 1 ] ; then \
( cd main ; make -i -r MODULE_DIRS="-I../dyn_em -I../dyn_nmm -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/esmf_time_f90 -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/main -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_netcdf -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_int -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/frame -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/share -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/phys -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/chem -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/inc -I/apps/netcdf/3.6.3-intel/include " SOLVER=em IDEAL_CASE=real em_wrf_SST_ESMF ) ; \
( cd test/em_esmf_exp ; /bin/rm -f wrf.exe ; ln -s ../../main/wrf.exe . ) ; \
( cd test/em_esmf_exp ; /bin/rm -f wrf_SST_ESMF.exe ; ln -s ../../main/wrf_SST_ESMF.exe . ) ; \
( cd test/em_esmf_exp ; /bin/rm -f real.exe ; ln -s ../../main/real.exe . ) ; \
( cd test/em_esmf_exp ; /bin/rm -f README.namelist ; ln -s ../../run/README.namelist . ) ; \
( cd test/em_esmf_exp ; /bin/rm -f ETAMPNEW_DATA.expanded_rain ETAMPNEW_DATA RRTM_DATA RRTMG_LW_DATA RRTMG_SW_DATA ; \
ln -sf ../../run/ETAMPNEW_DATA . ; \
ln -sf ../../run/ETAMPNEW_DATA.expanded_rain . ; \
ln -sf ../../run/RRTM_DATA . ; \
ln -sf ../../run/RRTMG_LW_DATA . ; \
ln -sf ../../run/RRTMG_SW_DATA . ; \
ln -sf ../../run/CAM_ABS_DATA . ; \
ln -sf ../../run/CAM_AEROPT_DATA . ; \
ln -sf ../../run/CAMtr_volume_mixing_ratio.RCP4.5 . ; \
ln -sf ../../run/CAMtr_volume_mixing_ratio.RCP6 . ; \
ln -sf ../../run/CAMtr_volume_mixing_ratio.RCP8.5 CAMtr_volume_mixing_ratio ; \
ln -sf ../../run/CAMtr_volume_mixing_ratio.A1B . ; \
ln -sf ../../run/CAMtr_volume_mixing_ratio.A2 . ; \
ln -sf ../../run/CLM_ALB_ICE_DFS_DATA . ; \
ln -sf ../../run/CLM_ALB_ICE_DRC_DATA . ; \
ln -sf ../../run/CLM_ASM_ICE_DFS_DATA . ; \
ln -sf ../../run/CLM_ASM_ICE_DRC_DATA . ; \
ln -sf ../../run/CLM_DRDSDT0_DATA . ; \
ln -sf ../../run/CLM_EXT_ICE_DFS_DATA . ; \
ln -sf ../../run/CLM_EXT_ICE_DRC_DATA . ; \
ln -sf ../../run/CLM_KAPPA_DATA . ; \
ln -sf ../../run/CLM_TAU_DATA . ; \
ln -sf ../../run/ozone.formatted . ; \
ln -sf ../../run/ozone_lat.formatted . ; \
ln -sf ../../run/ozone_plev.formatted . ; \
ln -sf ../../run/aerosol.formatted . ; \
ln -sf ../../run/aerosol_lat.formatted . ; \
ln -sf ../../run/aerosol_lon.formatted . ; \
ln -sf ../../run/aerosol_plev.formatted . ; \
ln -sf ../../run/CCN_ACTIVATE.BIN . ; \
if [ 4 -eq 8 ] ; then \
ln -sf ../../run/ETAMPNEW_DATA_DBL ETAMPNEW_DATA ; \
ln -sf ../../run/ETAMPNEW_DATA.expanded_rain_DBL ETAMPNEW_DATA.expanded_rain ; \
ln -sf ../../run/RRTM_DATA_DBL RRTM_DATA ; \
ln -sf ../../run/RRTMG_LW_DATA_DBL RRTMG_LW_DATA ; \
ln -sf ../../run/RRTMG_SW_DATA_DBL RRTMG_SW_DATA ; \
fi ) ; \
( cd test/em_esmf_exp ; /bin/rm -f GENPARM.TBL ; ln -s ../../run/GENPARM.TBL . ) ; \
( cd test/em_esmf_exp ; /bin/rm -f LANDUSE.TBL ; ln -s ../../run/LANDUSE.TBL . ) ; \
( cd test/em_esmf_exp ; /bin/rm -f SOILPARM.TBL ; ln -s ../../run/SOILPARM.TBL . ) ; \
( cd test/em_esmf_exp ; /bin/rm -f URBPARM.TBL ; ln -s ../../run/URBPARM.TBL . ) ; \
( cd test/em_esmf_exp ; /bin/rm -f VEGPARM.TBL ; ln -s ../../run/VEGPARM.TBL . ) ; \
( cd test/em_esmf_exp ; /bin/rm -f MPTABLE.TBL ; ln -s ../../run/MPTABLE.TBL . ) ; \
( cd test/em_esmf_exp ; /bin/rm -f tr49t67 ; ln -s ../../run/tr49t67 . ) ; \
( cd test/em_esmf_exp ; /bin/rm -f tr49t85 ; ln -s ../../run/tr49t85 . ) ; \
( cd test/em_esmf_exp ; /bin/rm -f tr67t85 ; ln -s ../../run/tr67t85 . ) ; \
( cd test/em_esmf_exp ; /bin/rm -f gribmap.txt ; ln -s ../../run/gribmap.txt . ) ; \
( cd test/em_esmf_exp ; /bin/rm -f grib2map.tbl ; ln -s ../../run/grib2map.tbl . ) ; \
fi
( cd test/em_real ; /bin/rm -f real.exe ; ln -s ../../main/real.exe . )
( cd test/em_real ; /bin/rm -f tc.exe ; ln -s ../../main/tc.exe . )
( cd test/em_real ; /bin/rm -f ndown.exe ; ln -s ../../main/ndown.exe . )
#TEMPORARILY REMOVED ( cd test/em_real ; /bin/rm -f nup.exe ; ln -s ../../main/nup.exe . )
( cd test/em_real ; /bin/rm -f README.namelist ; ln -s ../../run/README.namelist . )
( cd test/em_real ; /bin/rm -f ETAMPNEW_DATA.expanded_rain ETAMPNEW_DATA RRTM_DATA RRTMG_LW_DATA RRTMG_SW_DATA ; \
ln -sf ../../run/ETAMPNEW_DATA . ; \
ln -sf ../../run/ETAMPNEW_DATA.expanded_rain . ; \
ln -sf ../../run/RRTM_DATA . ; \
ln -sf ../../run/RRTMG_LW_DATA . ; \
ln -sf ../../run/RRTMG_SW_DATA . ; \
ln -sf ../../run/CAM_ABS_DATA . ; \
ln -sf ../../run/CAM_AEROPT_DATA . ; \
ln -sf ../../run/CAMtr_volume_mixing_ratio.RCP4.5 . ; \
ln -sf ../../run/CAMtr_volume_mixing_ratio.RCP6 . ; \
ln -sf ../../run/CAMtr_volume_mixing_ratio.RCP8.5 CAMtr_volume_mixing_ratio ; \
ln -sf ../../run/CAMtr_volume_mixing_ratio.A1B . ; \
ln -sf ../../run/CAMtr_volume_mixing_ratio.A2 . ; \
ln -sf ../../run/CLM_ALB_ICE_DFS_DATA . ; \
ln -sf ../../run/CLM_ALB_ICE_DRC_DATA . ; \
ln -sf ../../run/CLM_ASM_ICE_DFS_DATA . ; \
ln -sf ../../run/CLM_ASM_ICE_DRC_DATA . ; \
ln -sf ../../run/CLM_DRDSDT0_DATA . ; \
ln -sf ../../run/CLM_EXT_ICE_DFS_DATA . ; \
ln -sf ../../run/CLM_EXT_ICE_DRC_DATA . ; \
ln -sf ../../run/CLM_KAPPA_DATA . ; \
ln -sf ../../run/CLM_TAU_DATA . ; \
ln -sf ../../run/ozone.formatted . ; \
ln -sf ../../run/ozone_lat.formatted . ; \
ln -sf ../../run/ozone_plev.formatted . ; \
ln -sf ../../run/aerosol.formatted . ; \
ln -sf ../../run/aerosol_lat.formatted . ; \
ln -sf ../../run/aerosol_lon.formatted . ; \
ln -sf ../../run/aerosol_plev.formatted . ; \
ln -sf ../../run/capacity.asc . ; \
ln -sf ../../run/coeff_p.asc . ; \
ln -sf ../../run/coeff_q.asc . ; \
ln -sf ../../run/constants.asc . ; \
ln -sf ../../run/masses.asc . ; \
ln -sf ../../run/termvels.asc . ; \
ln -sf ../../run/kernels.asc_s_0_03_0_9 . ; \
ln -sf ../../run/kernels_z.asc . ; \
ln -sf ../../run/bulkdens.asc_s_0_03_0_9 . ; \
ln -sf ../../run/bulkradii.asc_s_0_03_0_9 . ; \
ln -sf ../../run/CCN_ACTIVATE.BIN . ; \
if [ 4 -eq 8 ] ; then \
ln -sf ../../run/ETAMPNEW_DATA_DBL ETAMPNEW_DATA ; \
ln -sf ../../run/ETAMPNEW_DATA.expanded_rain_DBL ETAMPNEW_DATA.expanded_rain ; \
ln -sf ../../run/RRTM_DATA_DBL RRTM_DATA ; \
ln -sf ../../run/RRTMG_LW_DATA_DBL RRTMG_LW_DATA ; \
ln -sf ../../run/RRTMG_SW_DATA_DBL RRTMG_SW_DATA ; \
fi )
( cd test/em_real ; /bin/rm -f GENPARM.TBL ; ln -s ../../run/GENPARM.TBL . )
( cd test/em_real ; /bin/rm -f LANDUSE.TBL ; ln -s ../../run/LANDUSE.TBL . )
( cd test/em_real ; /bin/rm -f SOILPARM.TBL ; ln -s ../../run/SOILPARM.TBL . )
( cd test/em_real ; /bin/rm -f URBPARM.TBL ; ln -s ../../run/URBPARM.TBL . )
( cd test/em_real ; /bin/rm -f VEGPARM.TBL ; ln -s ../../run/VEGPARM.TBL . )
( cd test/em_real ; /bin/rm -f MPTABLE.TBL ; ln -s ../../run/MPTABLE.TBL . )
( cd test/em_real ; /bin/rm -f tr49t67 ; ln -s ../../run/tr49t67 . )
( cd test/em_real ; /bin/rm -f tr49t85 ; ln -s ../../run/tr49t85 . )
( cd test/em_real ; /bin/rm -f tr67t85 ; ln -s ../../run/tr67t85 . )
( cd test/em_real ; /bin/rm -f gribmap.txt ; ln -s ../../run/gribmap.txt . )
( cd test/em_real ; /bin/rm -f grib2map.tbl ; ln -s ../../run/grib2map.tbl . )
( cd run ; /bin/rm -f real.exe ; ln -s ../main/real.exe . )
( cd run ; /bin/rm -f tc.exe ; ln -s ../main/tc.exe . )
( cd run ; /bin/rm -f ndown.exe ; ln -s ../main/ndown.exe . )
#TEMPORARILY REMOVED ( cd run ; /bin/rm -f nup.exe ; ln -s ../main/nup.exe . )
( cd run ; if test -f namelist.input ; then \
/bin/cp -f namelist.input namelist.input.backup ; fi ; \
/bin/rm -f namelist.input ; cp ../test/em_real/namelist.input . )
==========================================================================
build started: Tue Oct 3 13:47:44 GMT 2017
build completed: Tue Oct 3 13:48:23 GMT 2017
---> Problems building executables, look for errors in the build log <---
==========================================================================