Dockerfile

# JBrowse
# VERSION 1.0
FROM nginx
MAINTAINER Eric Rasche <esr@tamu.edu>
ENV DEBIAN_FRONTEND noninteractive

RUN apt-get -qq update --fix-missing
RUN apt-get --no-install-recommends -y install git build-essential zlib1g-dev libxml2-dev libexpat-dev postgresql-client libpq-dev

RUN mkdir -p /jbrowse/ && git clone --recursive https://github.com/gmod/jbrowse /jbrowse/ && \
    cd /jbrowse/ && \
    git checkout 1.11.6-release

WORKDIR /jbrowse/
RUN ./setup.sh && \
    ./bin/cpanm --no-test --force JSON Digest::CRC32 Hash::Merge PerlIO::gzip Devel::Size \
    Heap::Simple Heap::Simple::XS List::MoreUtils Exception::Class Test::Warn Bio::Perl \
    Bio::DB::SeqFeature::Store File::Next Bio::DB::Das::Chado && \
    rm -rf /root/.cpan/

RUN perl Makefile.PL && make && make install
RUN rm -rf /usr/share/nginx/html && ln -s /jbrowse/ /usr/share/nginx/html

VOLUME /data
COPY docker-entrypoint.sh /
CMD ["/docker-entrypoint.sh"]