run_tests.yml

name: Run tests

on:
  push:
    branches:
      - main
  pull_request:
    branches:
      - main

jobs:
  run-tests:
    runs-on: ubuntu-latest
    strategy:
      matrix:
        python-version: [3.7, 3.8, 3.9, "3.10", "3.11", "3.12"]
      max-parallel: 5

    steps:
    - uses: actions/checkout@v4
    - name: Set up Python
      uses: actions/setup-python@v5
      with:
        python-version: ${{ matrix.python-version }}

    - uses: actions/cache@v4
      with:
        path: ~/.cache/pip
        key: ${{ runner.os }}-pip-${{ hashFiles('**/setup.py') }}
        restore-keys: |
          ${{ runner.os }}-pip-

    - name: Install dependencies
      run: |
        sudo apt-get update
        sudo apt-get install -y inkscape
        pip install --upgrade pip
        pip install wheel setuptools numpy "cython<3.0"
        # force using latest nibabel
        pip install -U nibabel
        pip install -e . --no-build-isolation
        python -c 'import cortex; print(cortex.__full_version__)'

    - name: Test with pytest
      run: |
        pip install -q pytest pytest-cov
        pytest --cov=./

    - name: Upload coverage to Codecov
      uses: codecov/codecov-action@v4
      with:
        env_vars: OS,PYTHON
        fail_ci_if_error: true
        token: ${{ secrets.CODECOV_TOKEN }}
        verbose: false