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Display gene product 2 term relations #623

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hattrill opened this issue Sep 29, 2021 · 1 comment
Open

Display gene product 2 term relations #623

hattrill opened this issue Sep 29, 2021 · 1 comment

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@hattrill
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The gp2term relations are not displayed on AmiGO - just the old qualifiers. Can we update this to match the current annotations, please?

@kltm kltm changed the title gene product 2 term relations not displayed on AmiGO Display gene product 2 term relations Sep 29, 2021
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kltm commented Sep 29, 2021

Noting actively blocked upstream by: owlcollab/owltools#312
That's "technically" the main issue here (amigo isn't smart enough itself to have opinions this complicated about displays), but it's good to have this as a shadowing ticket so that we don't loose track.

To reiterate some parts of that, the original owltools loader was created in a very GAF 2.0 kind of world and does not properly pass through gp2term relations not included from then (there is a lot of hard-coded bits around relation handling).

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