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Confirmed. After looking at the code, this is probably an issue with org.geotools.renderer.chart.GeometryRenderer or org.geotools.renderer.chart.GeometryDataset.
Given the following testcode:
I get the following:
You can see the points being shifted against the lines they are part of.
The same result can be obtained by avoiding to set the size:
and then enlarging the plot window.
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