diff --git a/.github/workflows/__all-platform-bundle.yml b/.github/workflows/__all-platform-bundle.yml
index 990ea6edac..4bca2dc15d 100644
--- a/.github/workflows/__all-platform-bundle.yml
+++ b/.github/workflows/__all-platform-bundle.yml
@@ -60,10 +60,9 @@ jobs:
       - id: init
         uses: ./../action/init
         with:
+      # Swift is not supported on Ubuntu so we manually exclude it from the list here
+          languages: cpp,csharp,go,java,javascript,python,ruby
           tools: ${{ steps.prepare-test.outputs.tools-url }}
-      - uses: ./../action/.github/actions/setup-swift
-        with:
-          codeql-path: ${{ steps.init.outputs.codeql-path }}
       - name: Build code
         shell: bash
         run: ./build.sh
diff --git a/.github/workflows/__build-mode-manual.yml b/.github/workflows/__build-mode-manual.yml
index 1d309a5f9c..2a93c05a07 100644
--- a/.github/workflows/__build-mode-manual.yml
+++ b/.github/workflows/__build-mode-manual.yml
@@ -74,10 +74,6 @@ jobs:
             exit 1
           fi
 
-      - uses: ./../action/.github/actions/setup-swift
-        with:
-          codeql-path: ${{ steps.init.outputs.codeql-path }}
-
       - name: Build code
         shell: bash
         run: ./build.sh
diff --git a/.github/workflows/__export-file-baseline-information.yml b/.github/workflows/__export-file-baseline-information.yml
index 582e896e3c..688f9299e5 100644
--- a/.github/workflows/__export-file-baseline-information.yml
+++ b/.github/workflows/__export-file-baseline-information.yml
@@ -86,7 +86,7 @@ jobs:
         run: |
           cd "$RUNNER_TEMP/results"
           expected_baseline_languages="c csharp go java kotlin javascript python ruby"
-          if [[ $RUNNER_OS != "Windows" ]]; then
+          if [[ $RUNNER_OS == "macOS" ]]; then
             expected_baseline_languages+=" swift"
           fi
 
diff --git a/.github/workflows/__multi-language-autodetect.yml b/.github/workflows/__multi-language-autodetect.yml
index 7b917f725c..ba26cfc0d3 100644
--- a/.github/workflows/__multi-language-autodetect.yml
+++ b/.github/workflows/__multi-language-autodetect.yml
@@ -29,14 +29,24 @@ jobs:
         include:
           - os: macos-12
             version: stable-20230403
+          - os: ubuntu-latest
+            version: stable-20230403
           - os: macos-12
             version: stable-v2.13.5
+          - os: ubuntu-latest
+            version: stable-v2.13.5
           - os: macos-12
             version: stable-v2.14.6
+          - os: ubuntu-latest
+            version: stable-v2.14.6
           - os: macos-latest
             version: stable-v2.15.5
+          - os: ubuntu-latest
+            version: stable-v2.15.5
           - os: macos-latest
             version: stable-v2.16.6
+          - os: ubuntu-latest
+            version: stable-v2.16.6
           - os: macos-latest
             version: default
           - os: ubuntu-latest
@@ -85,9 +95,13 @@ jobs:
         id: init
         with:
           db-location: ${{ runner.temp }}/customDbLocation
+      # Swift is not supported on Ubuntu so we manually exclude it from the list here
+          languages: ${{ runner.os == 'Linux' && 'cpp,csharp,go,java,javascript,python,ruby'
+            || '' }}
           tools: ${{ steps.prepare-test.outputs.tools-url }}
 
       - uses: ./../action/.github/actions/setup-swift
+        if: runner.os == 'macOS'
         with:
           codeql-path: ${{ steps.init.outputs.codeql-path }}
 
@@ -139,8 +153,8 @@ jobs:
             exit 1
           fi
 
-      - name: Check language autodetect for Swift
-        if: runner.os != 'Windows' && matrix.version != 'stable-20230403'
+      - name: Check language autodetect for Swift on MacOS
+        if: runner.os == 'macOS' && matrix.version != 'stable-20230403'
         shell: bash
         run: |
           SWIFT_DB=${{ fromJson(steps.analysis.outputs.db-locations).swift }}
diff --git a/.github/workflows/__swift-custom-build.yml b/.github/workflows/__swift-custom-build.yml
index f298b17e20..765c336670 100644
--- a/.github/workflows/__swift-custom-build.yml
+++ b/.github/workflows/__swift-custom-build.yml
@@ -29,16 +29,10 @@ jobs:
         include:
           - os: macos-latest
             version: linked
-          - os: ubuntu-latest
-            version: linked
           - os: macos-latest
             version: default
-          - os: ubuntu-latest
-            version: default
           - os: macos-latest
             version: nightly-latest
-          - os: ubuntu-latest
-            version: nightly-latest
     name: Swift analysis using a custom build command
     permissions:
       contents: read
diff --git a/.github/workflows/__test-local-codeql.yml b/.github/workflows/__test-local-codeql.yml
index b2148455bc..a4141bca6b 100644
--- a/.github/workflows/__test-local-codeql.yml
+++ b/.github/workflows/__test-local-codeql.yml
@@ -66,10 +66,9 @@ jobs:
       - id: init
         uses: ./../action/init
         with:
+      # Swift is not supported on Ubuntu so we manually exclude it from the list here
+          languages: cpp,csharp,go,java,javascript,python,ruby
           tools: ./codeql-bundle-linux64.tar.gz
-      - uses: ./../action/.github/actions/setup-swift
-        with:
-          codeql-path: ${{ steps.init.outputs.codeql-path }}
       - name: Build code
         shell: bash
         run: ./build.sh
diff --git a/.github/workflows/__unset-environment.yml b/.github/workflows/__unset-environment.yml
index 3f12a3c2b8..82436d07f9 100644
--- a/.github/workflows/__unset-environment.yml
+++ b/.github/workflows/__unset-environment.yml
@@ -27,6 +27,16 @@ jobs:
       fail-fast: false
       matrix:
         include:
+          - os: ubuntu-latest
+            version: stable-20230403
+          - os: ubuntu-latest
+            version: stable-v2.13.5
+          - os: ubuntu-latest
+            version: stable-v2.14.6
+          - os: ubuntu-latest
+            version: stable-v2.15.5
+          - os: ubuntu-latest
+            version: stable-v2.16.6
           - os: ubuntu-latest
             version: default
           - os: ubuntu-latest
@@ -65,10 +75,9 @@ jobs:
         id: init
         with:
           db-location: ${{ runner.temp }}/customDbLocation
+      # Swift is not supported on Ubuntu so we manually exclude it from the list here
+          languages: cpp,csharp,go,java,javascript,python,ruby
           tools: ${{ steps.prepare-test.outputs.tools-url }}
-      - uses: ./../action/.github/actions/setup-swift
-        with:
-          codeql-path: ${{ steps.init.outputs.codeql-path }}
       - uses: actions/setup-go@v5
         with:
           go-version: '>=1.21.0'
diff --git a/.github/workflows/debug-artifacts.yml b/.github/workflows/debug-artifacts.yml
index 17010df62d..3ac61de084 100644
--- a/.github/workflows/debug-artifacts.yml
+++ b/.github/workflows/debug-artifacts.yml
@@ -52,9 +52,8 @@ jobs:
           debug: true
           debug-artifact-name: my-debug-artifacts
           debug-database-name: my-db
-      - uses: ./../action/.github/actions/setup-swift
-        with:
-          codeql-path: ${{ steps.init.outputs.codeql-path }}
+          # We manually exclude Swift from the languages list here, as it is not supported on Ubuntu
+          languages: cpp,csharp,go,java,javascript,python,ruby 
       - name: Build code
         shell: bash
         run: ./build.sh
diff --git a/.github/workflows/test-codeql-bundle-all.yml b/.github/workflows/test-codeql-bundle-all.yml
index 54ed2ed115..2524f58e48 100644
--- a/.github/workflows/test-codeql-bundle-all.yml
+++ b/.github/workflows/test-codeql-bundle-all.yml
@@ -42,10 +42,9 @@ jobs:
     - id: init
       uses: ./../action/init
       with:
+        # We manually exclude Swift from the languages list here, as it is not supported on Ubuntu
+        languages: cpp,csharp,go,java,javascript,python,ruby 
         tools: ${{ steps.prepare-test.outputs.tools-url }}
-    - uses: ./../action/.github/actions/setup-swift
-      with:
-        codeql-path: ${{ steps.init.outputs.codeql-path }}
     - name: Build code
       shell: bash
       run: ./build.sh
diff --git a/lib/init-action.js b/lib/init-action.js
index 6fb4f77466..6a82a8744d 100644
--- a/lib/init-action.js
+++ b/lib/init-action.js
@@ -188,6 +188,10 @@ async function run() {
             core.exportVariable("GOFLAGS", goFlags);
             core.warning("Passing the GOFLAGS env parameter to the init action is deprecated. Please move this to the analyze action.");
         }
+        if (config.languages.includes(languages_1.Language.swift) &&
+            process.platform === "linux") {
+            logger.warning(`Swift analysis on Ubuntu runner images is no longer supported. Please migrate to a macOS runner if this affects you.`);
+        }
         if (config.languages.includes(languages_1.Language.go) &&
             process.platform === "linux") {
             try {
diff --git a/lib/init-action.js.map b/lib/init-action.js.map
index e1340f6156..54910e83dd 100644
--- a/lib/init-action.js.map
+++ b/lib/init-action.js.map
@@ -1 +1 @@
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\ No newline at end of file
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\ No newline at end of file
diff --git a/pr-checks/checks/all-platform-bundle.yml b/pr-checks/checks/all-platform-bundle.yml
index 52ef3e234a..665152427d 100644
--- a/pr-checks/checks/all-platform-bundle.yml
+++ b/pr-checks/checks/all-platform-bundle.yml
@@ -7,10 +7,9 @@ steps:
   - id: init
     uses: ./../action/init
     with:
+      # Swift is not supported on Ubuntu so we manually exclude it from the list here
+      languages: cpp,csharp,go,java,javascript,python,ruby 
       tools: ${{ steps.prepare-test.outputs.tools-url }}
-  - uses: ./../action/.github/actions/setup-swift
-    with:
-      codeql-path: ${{ steps.init.outputs.codeql-path }}
   - name: Build code
     shell: bash
     run: ./build.sh
diff --git a/pr-checks/checks/build-mode-manual.yml b/pr-checks/checks/build-mode-manual.yml
index 623e06ffc9..add7d04d40 100644
--- a/pr-checks/checks/build-mode-manual.yml
+++ b/pr-checks/checks/build-mode-manual.yml
@@ -20,10 +20,6 @@ steps:
         exit 1
       fi
 
-  - uses: ./../action/.github/actions/setup-swift
-    with:
-      codeql-path: ${{ steps.init.outputs.codeql-path }}
-
   - name: Build code
     shell: bash
     run: ./build.sh
diff --git a/pr-checks/checks/export-file-baseline-information.yml b/pr-checks/checks/export-file-baseline-information.yml
index f0a8a5d853..759aef849d 100644
--- a/pr-checks/checks/export-file-baseline-information.yml
+++ b/pr-checks/checks/export-file-baseline-information.yml
@@ -29,7 +29,7 @@ steps:
     run: |
       cd "$RUNNER_TEMP/results"
       expected_baseline_languages="c csharp go java kotlin javascript python ruby"
-      if [[ $RUNNER_OS != "Windows" ]]; then
+      if [[ $RUNNER_OS == "macOS" ]]; then
         expected_baseline_languages+=" swift"
       fi
 
diff --git a/pr-checks/checks/multi-language-autodetect.yml b/pr-checks/checks/multi-language-autodetect.yml
index b1558cebc2..13423be0fb 100644
--- a/pr-checks/checks/multi-language-autodetect.yml
+++ b/pr-checks/checks/multi-language-autodetect.yml
@@ -1,14 +1,6 @@
 name: "Multi-language repository"
-description: "An end-to-end integration test of a multi-language repository using automatic language detection"
+description: "An end-to-end integration test of a multi-language repository using automatic language detection for MacOS"
 operatingSystems: ["macos", "ubuntu"]
-excludeOsAndVersionCombination: [ 
-  # Known failure for Swift on Linux before CLI v2.17.4.
-  [ "ubuntu", "stable-20230403" ], 
-  [ "ubuntu", "stable-v2.13.5" ], 
-  [ "ubuntu", "stable-v2.14.6" ], 
-  [ "ubuntu", "stable-v2.15.5" ],
-  [ "ubuntu", "stable-v2.16.6" ],
-]
 steps:
   - uses: actions/setup-go@v5
     with:
@@ -18,9 +10,12 @@ steps:
     id: init
     with:
       db-location: "${{ runner.temp }}/customDbLocation"
+      # Swift is not supported on Ubuntu so we manually exclude it from the list here
+      languages: ${{ runner.os == 'Linux' && 'cpp,csharp,go,java,javascript,python,ruby' || '' }}
       tools: ${{ steps.prepare-test.outputs.tools-url }}
 
   - uses: ./../action/.github/actions/setup-swift
+    if: runner.os == 'macOS'
     with:
       codeql-path: ${{ steps.init.outputs.codeql-path }}
 
@@ -72,8 +67,8 @@ steps:
         exit 1
       fi
 
-  - name: Check language autodetect for Swift
-    if: runner.os != 'Windows' && matrix.version != 'stable-20230403'
+  - name: Check language autodetect for Swift on MacOS
+    if: runner.os == 'macOS' && matrix.version != 'stable-20230403'
     shell: bash
     run: |
       SWIFT_DB=${{ fromJson(steps.analysis.outputs.db-locations).swift }}
diff --git a/pr-checks/checks/swift-custom-build.yml b/pr-checks/checks/swift-custom-build.yml
index 3bdd0748d5..bde017eaf1 100644
--- a/pr-checks/checks/swift-custom-build.yml
+++ b/pr-checks/checks/swift-custom-build.yml
@@ -1,7 +1,7 @@
 name: "Swift analysis using a custom build command"
 description: "Tests creation of a Swift database using custom build"
 versions: ["linked", "default", "nightly-latest"]
-operatingSystems: ["macos", "ubuntu"]
+operatingSystems: ["macos"]
 env:
   DOTNET_GENERATE_ASPNET_CERTIFICATE: "false"
 steps:
diff --git a/pr-checks/checks/test-local-codeql.yml b/pr-checks/checks/test-local-codeql.yml
index 92a73a6f6b..08b3d48349 100644
--- a/pr-checks/checks/test-local-codeql.yml
+++ b/pr-checks/checks/test-local-codeql.yml
@@ -12,10 +12,9 @@ steps:
   - id: init
     uses: ./../action/init
     with:
+      # Swift is not supported on Ubuntu so we manually exclude it from the list here
+      languages: cpp,csharp,go,java,javascript,python,ruby
       tools: ./codeql-bundle-linux64.tar.gz
-  - uses: ./../action/.github/actions/setup-swift
-    with:
-      codeql-path: ${{ steps.init.outputs.codeql-path }}
   - name: Build code
     shell: bash
     run: ./build.sh
diff --git a/pr-checks/checks/unset-environment.yml b/pr-checks/checks/unset-environment.yml
index c3803ff1ed..bc164bd44a 100644
--- a/pr-checks/checks/unset-environment.yml
+++ b/pr-checks/checks/unset-environment.yml
@@ -1,24 +1,15 @@
 name: "Test unsetting environment variables"
 description: "An end-to-end integration test that unsets some environment variables"
 operatingSystems: ["ubuntu"]
-excludeOsAndVersionCombination: [ 
-  # Known failure for Swift on Linux before CLI v2.17.4.
-  [ "ubuntu", "stable-20230403" ], 
-  [ "ubuntu", "stable-v2.13.5" ], 
-  [ "ubuntu", "stable-v2.14.6" ], 
-  [ "ubuntu", "stable-v2.15.5" ],
-  [ "ubuntu", "stable-v2.16.6" ],
-]
 
 steps:
   - uses: ./../action/init
     id: init
     with:
       db-location: ${{ runner.temp }}/customDbLocation
+      # Swift is not supported on Ubuntu so we manually exclude it from the list here
+      languages: cpp,csharp,go,java,javascript,python,ruby 
       tools: ${{ steps.prepare-test.outputs.tools-url }}
-  - uses: ./../action/.github/actions/setup-swift
-    with:
-      codeql-path: ${{ steps.init.outputs.codeql-path }}
   - uses: actions/setup-go@v5
     with:
       go-version: '>=1.21.0'
diff --git a/src/init-action.ts b/src/init-action.ts
index f02cb81ab9..e13e47f0c2 100644
--- a/src/init-action.ts
+++ b/src/init-action.ts
@@ -333,6 +333,15 @@ async function run() {
       );
     }
 
+    if (
+      config.languages.includes(Language.swift) &&
+      process.platform === "linux"
+    ) {
+      logger.warning(
+        `Swift analysis on Ubuntu runner images is no longer supported. Please migrate to a macOS runner if this affects you.`,
+      );
+    }
+
     if (
       config.languages.includes(Language.go) &&
       process.platform === "linux"
diff --git a/tests/multi-language-repo/build.sh b/tests/multi-language-repo/build.sh
index 80c08cce84..84d8096144 100755
--- a/tests/multi-language-repo/build.sh
+++ b/tests/multi-language-repo/build.sh
@@ -8,7 +8,7 @@ javac Main.java
 
 go build main.go
 
-if [[ "$OSTYPE" == "darwin"* || "$OSTYPE" == "linux-gnu"* ]]; then
+if [[ "$OSTYPE" == "darwin"* ]]; then
     swift build
 fi