From 712dbbcf09750c9600af71db2e7720cb32c6b836 Mon Sep 17 00:00:00 2001 From: Genomics team in Google Brain Date: Wed, 10 Apr 2019 13:14:03 -0700 Subject: [PATCH] Bump version number to 0.3.0, and add description to README. PiperOrigin-RevId: 242926878 --- README.md | 10 +++++++++- nucleus/pip_package/build_pip_package.sh | 2 +- nucleus/pip_package/egg_files/PKG-INFO | 2 +- 3 files changed, 11 insertions(+), 3 deletions(-) diff --git a/README.md b/README.md index 5c9b5bb..e94d341 100644 --- a/README.md +++ b/README.md @@ -69,9 +69,17 @@ bazel test -c opt $COPT_FLAGS nucleus/... ## Version -This is Nucleus 0.2.3. Nucleus follows [semantic +This is Nucleus 0.3.0. Nucleus follows [semantic versioning](https://semver.org/). +New in 0.3.0: + +* Reading of VCF, SAM, and most other genomics files is now twice as fast. +* Read range and end calculations are now done in C++ for speed. +* VcfReader can now read "headerless" VCF files. +* variant\_utils.major\_allele\_frequency now 5x faster. +* Memory leaks fixed in TFRecordReader/Writer and gfile\_cc. + New in 0.2.3: * Nucleus no longer depends on any specific version of TensorFlow's python diff --git a/nucleus/pip_package/build_pip_package.sh b/nucleus/pip_package/build_pip_package.sh index 7b2085c..1d816bd 100755 --- a/nucleus/pip_package/build_pip_package.sh +++ b/nucleus/pip_package/build_pip_package.sh @@ -28,7 +28,7 @@ set -x # When changing NUCLEUS_VERSION, be sure to also change it in # egg_files/PKG-INFO. -NUCLEUS_VERSION="0.2.3" +NUCLEUS_VERSION="0.3.0" PACKAGE_NAME="google_nucleus-${NUCLEUS_VERSION}" PYTHON_VERSION="2.7" PLATFORM="linux-x86_64" diff --git a/nucleus/pip_package/egg_files/PKG-INFO b/nucleus/pip_package/egg_files/PKG-INFO index 74597bd..a7690a8 100644 --- a/nucleus/pip_package/egg_files/PKG-INFO +++ b/nucleus/pip_package/egg_files/PKG-INFO @@ -1,6 +1,6 @@ Metadata-Version: 1.1 Name: google-nucleus -Version: 0.2.3 +Version: 0.3.0 Summary: A library for reading and writing genomics data. Home-page: https://github.com/google/nucleus Author: The Genomics team in Google Brain