Nucleus 0.6.0

• Upgrade to support TensorFlow 2.6.0 specifically.
• Upgrade to Python 3.8.

This release was tested on Ubuntu 20.04.

Nucleus 0.5.9

New in 0.5.9:

• Upgrade to support TensorFlow 2.5.0 specifically.

Nucleus 0.5.8

New in 0.5.8:

• Update util/vis.py to use updated channel names.
• Support MED_DP (median DP) field for a VariantCall.

Nucleus 0.5.7

New in 0.5.7:

• Add automatic pileup curation functionality in util/vis.py.
• Upgrade protobuf settings to support TensorFlow 2.4.0 specifically.

Nucleus 0.5.6

New in 0.5.6:

• Upgrade to protobuf 3.9.2 to support TensorFlow 2.3.0 specifically.

Nucleus 0.5.5

New in 0.5.5:

• Upgrade protobuf settings to support TensorFlow 2.2.0 specifically.

Nucleus 0.5.4

New in 0.5.4:

• Upgrade to protobuf 3.8.0 to support TensorFlow 2.1.0.
• Add explicit .close() method to TFRecordWriter.

Nucleus 0.5.3

New in 0.5.3:

• Fixes memory leaks in message_module.cc.
• Updates setup.py to install .egg-info directory for pip 20.2+ compatibility.
• Pins TensorFlow to 2.0.0 for protobuf version compatibility.
• Pins setuptools to 49.6.0 to avoid breaking changes of setuptools 50.

Nucleus 0.5.2

New in 0.5.2:

• Upgrades htslib dependency from 1.9 to 1.10.2.
• More informative error message for failed SAM header parsing.
• util/vis.py now supports saving images to Google Cloud Storage.

Nucleus 0.5.1

New in 0.5.1:

• Updated documentation.
• Added list of read-advancing CIGAR ops.
• Added label_from_example utility in nucleus.util.vis.
• Added simplify_variant_alleles in nucleus.util.variant_utils.