From 96d0bb0e7362b33285825b9ba0860970cc21f93d Mon Sep 17 00:00:00 2001
From: Mike Smith <grimbough@gmail.com>
Date: Tue, 19 Mar 2024 15:14:49 +0100
Subject: [PATCH] Switch from realpath to readlink

---
 setup-bioc/get-r-version.sh | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/setup-bioc/get-r-version.sh b/setup-bioc/get-r-version.sh
index 887b1ce..6b6696b 100755
--- a/setup-bioc/get-r-version.sh
+++ b/setup-bioc/get-r-version.sh
@@ -8,7 +8,7 @@
 #   selection <- tolower( input_arguments[3] )
 # }
 
-mapping_file=`realpath $1`
+mapping_file=`readlink -f $1`
 bioc_version=`echo $2 | tr '[:upper:]' '[:lower:]'`
 selection=`echo $3 | tr '[:upper:]' '[:lower:]'`