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Using ANCOM-BC2 for DA analysis #364

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scilexenko opened this issue Jul 29, 2024 · 0 comments
Open

Using ANCOM-BC2 for DA analysis #364

scilexenko opened this issue Jul 29, 2024 · 0 comments

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@scilexenko
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Hello,

After benchmark testing of different DA methods for my dataset, I discovered that DESeq2 with poscounts and ANCOM-BC2 are the most performant tests for DA analysis. Thus, I was wandering is it somehow possible to use DESeq2 with poscounts estimation or ANCOM-BC2 as DA test?

Thank you for your cooperation,
Ivan

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