Skip to content
New issue

Have a question about this project? # for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “#”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? # to your account

Terminology Upload - SnomedCT - relationships lost without EN version #6492

Open
gdrouet opened this issue Nov 21, 2024 · 1 comment
Open

Comments

@gdrouet
Copy link

gdrouet commented Nov 21, 2024

NOTE: Before filing a ticket, please see the following URL:
https://github.com/hapifhir/hapi-fhir/wiki/Getting-Help

Describe the bug
The hapi-fhir-cli does no import relationships when loading the SnomedCT in a different language than English.

To Reproduce
Steps to reproduce the behavior:

  1. Download the french edition of SnomedCT here: https://smt.esante.gouv.fr/catalogue-des-terminologies/
  2. Import the ZIP file: hapi-fhir-cli upload-terminology -d ./SnomedCT_ManagedServiceFR_PRODUCTION_FR1000315_20240621T120000Z.zip -v r5 -t http://localhost:9090/server/DEFAULT -u 'http://snomed.info/sct'
  3. The table TRM_CONCEPT_PC_LINK is not populated with the links between SnomedCT concepts

Expected behavior
All the relationships must be imported.

Environment (please complete the following information):
HAPI FHIR: 7.2.2
OS: Windows

Additional context
In the SctHandlerRelationship class, we can find this condition that fails when the SCT is not in english:

if (typeConcept.getDisplay().equals("Is a (attribute)"))

I don't know why a string comparison is performed here since simply cheking the typeId should work the same way and be valid for other languages.

@jamesagnew
Copy link
Collaborator

Interesting.

FWIW if someone wanted to take a crack at fixing this, the test class TerminologyLoaderSvcSnomedCtTest has a test method testLoadSnomedCt() which currently runs the english loader against a manually created small subset of the english files. A PR which addresses this issue and adds a test using a similar french equivalent test file set would be gladly accepted.

# for free to join this conversation on GitHub. Already have an account? # to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants