DR10 - POG-CA QC

[edsu7]

No description provided.

[edsu7]

QC tsv

https://docs.google.com/spreadsheets/d/1mNglvKT4_-E94SRt_giqhjT7om66_NLF/edit?gid=610582384#gid=610582384
https://docs.google.com/spreadsheets/d/1yLWWV6Vh_c2SyPVaPTedHDpdagjXRJFG/edit?usp=sharing&ouid=104625230692579285705&rtpof=true&sd=true
https://docs.google.com/spreadsheets/d/1r9s44pky0kIDUBN83gY6Bk9JtwpiWIfW/edit?gid=1129374221#gid=1129374221

Release notes:

Donor Counts	239	215	1	1
Clinical		X	X	X
DNA Alignment		X	X	X
GATK Variant		X	X
Sanger Variant	X	X		X

Follow up

• DO252253 not released b/c of data issue affecting SA613407 (1/2 pairs) - resubmitted, realignment pending
• SA613447 low coverage - program has been notified
• DO252107 missing variant calls
• DO252243,DO252206,DO252087,DO252377,DO252569 missing sanger
• DO250564 needs mutect
• normals for following donors need to be aligned:

DO252189
DO252339
DO252386
DO252385
DO252383
DO252384
DO252431
DO252499
DO252505
DO252509
DO252510
DO252517
DO252511
DO252572
DO252577
DO252624

Edits:

• update TSV
• updated workshow to reflect added donors w/exceptions

[lindaxiang]

Looks good to me.