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DR11 - DNA-Seq Alignments #1175

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edsu7 opened this issue Sep 20, 2024 · 4 comments
Closed

DR11 - DNA-Seq Alignments #1175

edsu7 opened this issue Sep 20, 2024 · 4 comments
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blocked blocked data-release 11

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edsu7 commented Sep 20, 2024 •
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Current spreadsheet to track workflows:
https://docs.google.com/spreadsheets/d/1M-e0tpis_YiZ5avCtppifIr1_pvXb7dhDJJoHs7L120/edit?gid=2122588514#gid=2122588514
@edsu7 edsu7 self-assigned this Sep 20, 2024
@edsu7 edsu7 changed the title DR11 - Alignments DR11 - DNA-Seq Alignments Sep 20, 2024
@edsu7 edsu7 added the blocked blocked label Oct 31, 2024
@edsu7 edsu7 mentioned this issue Oct 31, 2024
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edsu7 commented Oct 31, 2024

  • wes-6433e7bae0d646a28225e58dbe912711 failed during QC
    • unpublish 9388ee8a-ce5f-46fe-88ee-8ace5f16fea3
    • see wes-fb17a42899cd43f894c0f6af35c01a5
  • wes-938141fc7d4f449a95b27fb6585abaeb failed during QC,
    • unpublish 99ba7299-aa08-4502-ba72-99aa08e50290
    • see wes-ec9578158e4e495fb435e07a411b9c61

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edsu7 commented Nov 28, 2024

DR11 audited runs:
https://docs.google.com/spreadsheets/d/1c8YkD0VniVK7JaD6VVeja0WbTpVkP40i0gd40RGSCW4/edit?gid=908348895#gid=908348895

runs identified in red have been unpublished

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edsu7 commented Nov 28, 2024

QC for DNA-seq:
https://docs.google.com/spreadsheets/d/1PmOd411zSWx9TpDlvSdx4161QZ30U_ehhwIf5c4EAV4/edit?usp=sharing

  • dark grey : known problems from past data releases
  • light grey (withhold from release) :
    • POG-CA DO252253 : 1/2 tumour normal analyses complete
    • MUTO-INTL DO253080 : missing variant calls
  • yellow (pending review) :
    • POG-CA DO252243 : update to 1/2 tumour normal analyses

This was referenced Nov 28, 2024
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edsu7 commented Dec 9, 2024

Closing see #1201

@edsu7 edsu7 closed this as completed Dec 9, 2024
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