NCBIGene: wrong path to source

[sergiocontrino]

Jan 03 15:25:28 [DEBUG ] Error fetching NCBI Gene  () ref_GRCh38.p12_top_level.gff3.gz => /micklem/data/human/gff/2020-01-03/ref_GRCh38.p12_top_level.gff3.gz
Jan 03 15:25:28 [DEBUG ] Cannot change working directory to genomes/H_sapiens/GFF - genomes/H_sapiens/GFF: No such file or directory
 at /usr/lib/x86_64-linux-gnu/perl5/5.20/Moose/Meta/Method/Delegation.pm line 109.
Jan 03 15:25:28 [DEBUG ]  at /usr/share/perl5/Ouch.pm line 29.
	Ouch::ouch("Cannot change working directory to genomes/H_sapiens/GFF - ge"...) called at /usr/share/perl5/Ouch.pm line 34
	Ouch::throw("Cannot change working directory to genomes/H_sapiens/GFF - ge"...) called at bin/../lib/DataDownloader/Source/ABC.pm line 112
	DataDownloader::Source::ABC::fetch_all_data(DataDownloader::Source::NCBIGff=HASH(0x533ea98)) called at bin/../lib/DataDownloader/Role/Source.pm line 180
	DataDownloader::Role::Source::__ANON__() called at /usr/share/perl5/Ouch.pm line 23
	eval {...} called at /usr/share/perl5/Ouch.pm line 23
	Ouch::try(CODE(0x5341940)) called at bin/../lib/DataDownloader/Role/Source.pm line 183
	DataDownloader::Role::Source::get_data(DataDownloader::Source::NCBIGff=HASH(0x533ea98)) called at bin/download_data line 75
	eval {...} called at bin/download_data line 73

new URL:
ftp://ftp.ncbi.nlm.nih.gov/genomes/Homo_sapiens/current/GCF_000001405.39_GRCh38.p13/GCF_000001405.39_GRCh38.p13_genomic.gff.gz

see also #4

[sergiocontrino]

it is source NCBIGff !

[sergiocontrino]

see commit d41206b

[sergiocontrino]

this is now dealt with the getData script