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index.html
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<!DOCTYPE html>
<html>
<head>
<!-- Latest compiled and minified JavaScript -->
<!-- Latest compiled and minified CSS -->
<link rel="stylesheet" href="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.7/css/bootstrap.min.css" integrity="sha384-BVYiiSIFeK1dGmJRAkycuHAHRg32OmUcww7on3RYdg4Va+PmSTsz/K68vbdEjh4u" crossorigin="anonymous">
<link rel="stylesheet" type="text/css" href="https://www.ebi.ac.uk/gxa/resources/css/customized-bootstrap-3.3.5.css"/>
<link rel="stylesheet" href="./assets/css/jquery.flexdatalist.min.css">
<link rel="stylesheet" type="text/css" href="https://cdn.datatables.net/1.10.17/css/jquery.dataTables.min.css"/>
<link href="./assets/css/protvista.css" rel="stylesheet"/>
<link rel="stylesheet" href="./assets/css/style.css">
<script>if (typeof module === "object") {window.module = module; module = undefined;}</script>
<script src="https://ajax.googleapis.com/ajax/libs/jquery/3.3.1/jquery.min.js"></script>
<script src="https://cdnjs.cloudflare.com/ajax/libs/popper.js/1.14.3/umd/popper.min.js" integrity="sha384-ZMP7rVo3mIykV+2+9J3UJ46jBk0WLaUAdn689aCwoqbBJiSnjAK/l8WvCWPIPm49" crossorigin="anonymous"></script>
<script src="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.7/js/bootstrap.min.js" integrity="sha384-Tc5IQib027qvyjSMfHjOMaLkfuWVxZxUPnCJA7l2mCWNIpG9mGCD8wGNIcPD7Txa" crossorigin="anonymous"></script>
<script src="./assets/js/jquery.flexdatalist.min.js"></script>
<script language="JavaScript" type="text/javascript"
src="https://www.ebi.ac.uk/gxa/resources/js-bundles/vendorCommons.bundle.js"></script>
<script language="JavaScript" type="text/javascript"
src="https://www.ebi.ac.uk/gxa/resources/js-bundles/expressionAtlasHeatmapHighcharts.bundle.js"></script>
<script>
require("./renderer.js");
</script>
<script>if (window.module) module = window.module;</script>
<title>Genotify</title>
</head>
<body>
<div class="content flex-container">
<div class="split-div">
<div class="query-form">
<label class="my-label" for="query" id="query-label">Search for:</label>
<div class="input-group">
<input type="text" class="form-control" placeholder="CDK2, cyclin kinase 2, Entrez ID, etc" id="query">
<div class="input-group-btn">
<button class="btn btn-default" type="button" id="search-button">
<i class="glyphicon glyphicon-search"></i>
</button>
</div>
</div>
<br>
<label class="my-label">Limit Search to:</label>
<div class="input-group">
<input type="text" data-min-length="1" placeholder="Select species..." class="flexdatalist form-control" data-data="species_search.json" data-value-property="id" data-search-in="name" multiple="multiple" name="species_name_suggestion_multiple">
</div>
<div class="container hidden"></div>
</div>
<div id="hit-div">
<div>
<label class="hidden my-label" for="hits" id="hits-label">
Hits
</label>
<div class="hidden text" id="hits" disabled></div>
<label class="hidden my-label" for="match-score" id="match-score-label">
Match Score
</label>
<div class="hidden text" id="match-score" disabled></div>
</div>
<div id="species-div">
<label class="hidden my-label" for="tax-id" id="tax-id-label">
TaxID
</label>
<div class="hidden text" id="tax-id" disabled></div>
<label class="hidden my-label" for="species" id="species-label">
Species
</label>
<div class="hidden text" id="species" disabled></div>
</div>
</div>
</div>
<div id="hits-div">
<div class="flex-me">
<table class="display compact" id="hits-table">
<caption>
Hits
</caption>
</table>
</div>
</div>
<hr class="flex-rule">
<h3 class="sect-header" data-toggle="collapse" data-target="#info-div,#loc-div" id="basics-header"><span class="glyphicon glyphicon-collapse-down"></span>Gene Basics</h3>
<div class="split-div" id="basics">
<div class="info-left collapse" id="info-div">
<label class="hidden my-label" for="gene-symbol" id="gene-symbol-label">
Official Symbol
</label>
<div class="hidden text" id="gene-symbol" disabled></div>
<label class="hidden my-label" for="gene-name" id="gene-name-label">
Official Name
</label>
<div class="hidden text" id="gene-name" disabled></div>
<label class="hidden my-label" for="hgnc-id" id="hgnc-id-label">
HGNC ID
</label>
<div class="hidden text add-link" id="hgnc-id" disabled></div>
<label class="hidden my-label" for="alias" id="alias-label">
Aliases
</label>
<div class="hidden text" id="alias" disabled></div>
<label class="hidden my-label" for="other-names" id="other-names-label">
Other Names
</label>
<div class="hidden text" id="other-names" disabled></div>
</div>
<div class="info-right collapse" id="loc-div">
<label class="hidden my-label" for="location" id="location-label">
Chromosomal Location
</label>
<div class="hidden text" id="location" disabled></div>
<label class="hidden my-label" for="gen-pos" id="gen-pos-label">
Genomic Position
</label>
<div class="hidden text" id="gen-pos" disabled></div>
<label class="hidden my-label" for="19gen-pos" id="19gen-pos-label">
hg19 Genomic Position
</label>
<div class="hidden text add-link" id="19gen-pos" disabled></div>
<label class="hidden my-label" for="mm9gen-pos" id="mm9gen-pos-label">
mm9 Genomic Position
</label>
<div class="hidden text add-link" id="mm9gen-pos" disabled></div>
<label class="hidden my-label" for="gene-type" id="gene-type-label">
Gene Type
</label>
<div class="hidden text" id="gene-type" disabled></div>
</div>
</div>
<hr class="flex-rule">
<h3 class="sect-header" data-toggle="collapse" data-target="#summary-div" id="function-header"><span class="glyphicon glyphicon-collapse-down"></span>Function</h3>
<div id="summary-div" class="collapse">
<label class="hidden my-label" for="wikipedia" id="wikipedia-label">
Wikipedia
</label>
<div class="hidden text add-link" id="wikipedia" disabled></div>
<label class="hidden my-label" for="entrez-summary" id="entrez-summary-label">
Entrez Summary
</label>
<div class="hidden text just-text" id="entrez-summary" disabled></div>
<label class="hidden my-label" for="uniprot-summary" id="uniprot-summary-label">
Uniprot Summary
</label>
<div class="hidden text just-text" id="uniprot-summary" disabled></div>
<label class="hidden my-label" for="wormbase-summary" id="wormbase-summary-label">
Wormbase Summary
</label>
<div class="hidden text just-text" id="wormbase-summary" disabled></div>
<label class="hidden my-label" for="interpro" id="interpro-label">
Interpro Domains
</label>
<div class="hidden text add-link interpro" id="interpro" disabled></div>
<label class="hidden my-label" for="gobp" id="gobp-label">
GO Biological Processes
</label>
<div class="hidden add-link text go" id="gobp" disabled></div>
<label class="hidden my-label" for="gomf" id="gomf-label">
GO Molecular Function
</label>
<div class="hidden add-link text go" id="gomf" disabled></div>
<label class="hidden my-label" for="gocc" id="gocc-label">
GO Cellular Component
</label>
<div class="hidden add-link text go" id="gocc" disabled></div>
</div>
<hr class="flex-rule">
<h3 class="sect-header" data-toggle="collapse" data-target="#expression" id="expression-header">
<span class="glyphicon glyphicon-collapse-down"></span>Expression</h3>
<div id="expression" class="collapse hidden">
<button type="button" class="btn btn-sm" id="reset-button">Default view</button>
<table class="display compact" id="exp-table">
</table>
<div id="highchartsContainer"></div>
</div>
<hr class="flex-rule">
<h3 class="sect-header" data-toggle="collapse" data-target="#protein" id="protein-header">
<span class="glyphicon glyphicon-collapse-down"></span>Protein Viewer</h3>
<div id="protein" class="collapse hidden">
<div id="proteinContainer"></div>
</div>
<hr class="flex-rule">
<h3 class="sect-header" data-toggle="collapse" data-target="#diseases" id="diseases-header">
<span class="glyphicon glyphicon-collapse-down"></span>Disease Associations</h3>
<div class="collapse hidden flex-me" id="diseases">
<table class="display compact" id="disease-table">
</table>
</div>
<hr class="flex-rule">
<h3 class="sect-header" data-toggle="collapse" data-target="#db-div,#db2-div" id="accessions-header">
<span class="glyphicon glyphicon-collapse-down"></span>Accessions</h3>
<div class="split-div" id="accessions">
<div class="info-left collapse" id="db-div">
<label class="hidden my-label" for="gene-id" id="gene-id-label">
Entrez
<span class="glyphicon glyphicon-question-sign" data-toggle="tooltip"
data-original-title="An NCBI database for vertebrate and invertebrate genes with links to genome, phenotype, and locus specific resources."></span>
</label>
<div class="hidden text add-link" id="gene-id" disabled></div>
<label class="hidden my-label" for="ensembl" id="ensembl-label">
Ensembl
<span class="glyphicon glyphicon-question-sign" data-toggle="tooltip"
data-original-title="Vast suite of databases and tools that support research in comparative genomics, evolution, and transcriptional regulation for dozens of species."></span>
</label>
<div class="hidden text add-link" id="ensembl" disabled></div>
<label class="hidden my-label" for="uniprot" id="uniprot-label">
UniProtKB
<span class="glyphicon glyphicon-question-sign" data-toggle="tooltip"
data-original-title="A comprehensive knowledgebase for proteins, providing sequence information and curated functional summaries."></span>
</label>
<div class="hidden text add-link" id="uniprot" disabled></div>
</div>
<div class="info-right collapse" id="db2-div">
<label class="hidden my-label" for="omim" id="omim-label">
OMIM
<span class="glyphicon glyphicon-question-sign" data-toggle="tooltip"
data-original-title="A comprehensive compendium of all known mendelian disorders,
focusing on the relationship between phenotype and genotype."></span>
</label>
<div class="hidden text add-link" id="omim" disabled></div>
<label class="hidden my-label" for="pharmgkb" id="pharmgkb-label">
PharmGKB
<span class="glyphicon glyphicon-question-sign" data-toggle="tooltip"
data-original-title="A comprehensive resource that curates knowledge about the impact of genetic variation on drug response."></span>
</label>
<div class="hidden text add-link" id="pharmgkb" disabled></div>
<label class="hidden my-label" for="prosite" id="prosite-label">
PROSITE
<span class="glyphicon glyphicon-question-sign" data-toggle="tooltip"
data-original-title="A protein database that describes protein families, domains, and functional sites."></span>
</label>
<div class="hidden text add-link" id="prosite" disabled></div>
<label class="hidden my-label" for="pfam" id="pfam-label">
Pfam
<span class="glyphicon glyphicon-question-sign" data-toggle="tooltip"
data-original-title="A database of annotated protein families generated using hidden Markov models."></span>
</label>
<div class="hidden text add-link" id="pfam" disabled></div>
</div>
</div>
</div>
<div class="footer">
<p>© 2019 Payton Lab - Powered by <a href="http://mygene.info">MyGene.info</a>, <a href="https://www.ebi.ac.uk/gxa/home">EBI Expression Atlas</a>, <a href="http://ctdbase.org">CTDbase</a>, <a href="https://www.wormbase.org">WormBase</a>, and <a href="https://www.uniprot.org/">UniProtKB.</a></p>
</div>
</body>
</html>